miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13268 5' -55.7 NC_003401.1 + 122437 1.1 0.00205
Target:  5'- gGCCGCUGCCGAAACCAACGCCGCUUGa -3'
miRNA:   3'- -CGGCGACGGCUUUGGUUGCGGCGAAC- -5'
13268 5' -55.7 NC_003401.1 + 118697 0.81 0.196129
Target:  5'- gGCCGCUGgCGcggaaauuuccccaGAACCGgccGCGCCGCUUGg -3'
miRNA:   3'- -CGGCGACgGC--------------UUUGGU---UGCGGCGAAC- -5'
13268 5' -55.7 NC_003401.1 + 86273 0.76 0.359302
Target:  5'- -aCGUUGCCGAcugAAUCAugGCCGCUg- -3'
miRNA:   3'- cgGCGACGGCU---UUGGUugCGGCGAac -5'
13268 5' -55.7 NC_003401.1 + 52021 0.72 0.552603
Target:  5'- aGCUGCUGCCGAGGCCA-UGUucccuuaucaUGCUUa -3'
miRNA:   3'- -CGGCGACGGCUUUGGUuGCG----------GCGAAc -5'
13268 5' -55.7 NC_003401.1 + 8197 0.72 0.562765
Target:  5'- cCCGCgGUCGAGAC--ACGCCGCUUu -3'
miRNA:   3'- cGGCGaCGGCUUUGguUGCGGCGAAc -5'
13268 5' -55.7 NC_003401.1 + 23640 0.72 0.572977
Target:  5'- cGCCGCgagcgGCCGGcAGgUGGCGCCGCg-- -3'
miRNA:   3'- -CGGCGa----CGGCU-UUgGUUGCGGCGaac -5'
13268 5' -55.7 NC_003401.1 + 103131 0.72 0.583231
Target:  5'- aCCGCcGuCCGAGGCCAcCGCCGUUc- -3'
miRNA:   3'- cGGCGaC-GGCUUUGGUuGCGGCGAac -5'
13268 5' -55.7 NC_003401.1 + 128422 0.71 0.614182
Target:  5'- aCCGUUGCCcgagaGAGACCcaauauGCGCCGCggUGa -3'
miRNA:   3'- cGGCGACGG-----CUUUGGu-----UGCGGCGa-AC- -5'
13268 5' -55.7 NC_003401.1 + 120864 0.71 0.614182
Target:  5'- gGCCgGCUGCCaaGAACCAGUGgCGCUUGc -3'
miRNA:   3'- -CGG-CGACGGc-UUUGGUUGCgGCGAAC- -5'
13268 5' -55.7 NC_003401.1 + 30169 0.71 0.614182
Target:  5'- gGCCuuUGCCu---CCAGCGCCGCUa- -3'
miRNA:   3'- -CGGcgACGGcuuuGGUUGCGGCGAac -5'
13268 5' -55.7 NC_003401.1 + 132720 0.71 0.645256
Target:  5'- gGCCGCccgGCaucgGGAGCCGcGCGCCGCg-- -3'
miRNA:   3'- -CGGCGa--CGg---CUUUGGU-UGCGGCGaac -5'
13268 5' -55.7 NC_003401.1 + 132364 0.7 0.665933
Target:  5'- gGCCGCcGCCcccGGCCGccccGCGCCGCg-- -3'
miRNA:   3'- -CGGCGaCGGcu-UUGGU----UGCGGCGaac -5'
13268 5' -55.7 NC_003401.1 + 132199 0.7 0.683422
Target:  5'- uGCCuaGCgGCCGGgcccggaggcgcccGGCCGGCGCCGCc-- -3'
miRNA:   3'- -CGG--CGaCGGCU--------------UUGGUUGCGGCGaac -5'
13268 5' -55.7 NC_003401.1 + 52057 0.7 0.696714
Target:  5'- aCCGUUGUCGGAACgcuagaAACGUCGCUg- -3'
miRNA:   3'- cGGCGACGGCUUUGg-----UUGCGGCGAac -5'
13268 5' -55.7 NC_003401.1 + 23958 0.7 0.710924
Target:  5'- gGCCGC-GCCGGuuucauauauccgccAACCGGCGCgGCc-- -3'
miRNA:   3'- -CGGCGaCGGCU---------------UUGGUUGCGgCGaac -5'
13268 5' -55.7 NC_003401.1 + 119753 0.7 0.716974
Target:  5'- gGCCGCgagguugcgGCCGAAacGCCGACGgccuCCGCc-- -3'
miRNA:   3'- -CGGCGa--------CGGCUU--UGGUUGC----GGCGaac -5'
13268 5' -55.7 NC_003401.1 + 14185 0.7 0.716974
Target:  5'- uGCCgGC-GCCGGAGCCGuucaGCCGCc-- -3'
miRNA:   3'- -CGG-CGaCGGCUUUGGUug--CGGCGaac -5'
13268 5' -55.7 NC_003401.1 + 1472 0.69 0.734955
Target:  5'- uGCCGCgggacgucuacgGCCaGAGACCAGCGaaGCa-- -3'
miRNA:   3'- -CGGCGa-----------CGG-CUUUGGUUGCggCGaac -5'
13268 5' -55.7 NC_003401.1 + 132428 0.69 0.745801
Target:  5'- cCCGCgggggGCCGggGCCGcccccggGUGCCGCUc- -3'
miRNA:   3'- cGGCGa----CGGCuuUGGU-------UGCGGCGAac -5'
13268 5' -55.7 NC_003401.1 + 27680 0.69 0.746782
Target:  5'- uGCCgGCUGCguggCGAGACCGGCGUgGUg-- -3'
miRNA:   3'- -CGG-CGACG----GCUUUGGUUGCGgCGaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.