miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13268 5' -55.7 NC_003401.1 + 721 0.67 0.838027
Target:  5'- gGCCGCuUGCCuGcuACUAGgGCUGCUg- -3'
miRNA:   3'- -CGGCG-ACGG-CuuUGGUUgCGGCGAac -5'
13268 5' -55.7 NC_003401.1 + 1472 0.69 0.734955
Target:  5'- uGCCGCgggacgucuacgGCCaGAGACCAGCGaaGCa-- -3'
miRNA:   3'- -CGGCGa-----------CGG-CUUUGGUUGCggCGaac -5'
13268 5' -55.7 NC_003401.1 + 8197 0.72 0.562765
Target:  5'- cCCGCgGUCGAGAC--ACGCCGCUUu -3'
miRNA:   3'- cGGCGaCGGCUUUGguUGCGGCGAAc -5'
13268 5' -55.7 NC_003401.1 + 8347 0.68 0.803359
Target:  5'- cGCgCGCUGuuccCCGAcACCAAgacCGCCGCg-- -3'
miRNA:   3'- -CG-GCGAC----GGCUuUGGUU---GCGGCGaac -5'
13268 5' -55.7 NC_003401.1 + 11705 0.66 0.883446
Target:  5'- cGCCG-UGCCGAucgcgauuaucacGACCcACGcCCGCa-- -3'
miRNA:   3'- -CGGCgACGGCU-------------UUGGuUGC-GGCGaac -5'
13268 5' -55.7 NC_003401.1 + 14185 0.7 0.716974
Target:  5'- uGCCgGC-GCCGGAGCCGuucaGCCGCc-- -3'
miRNA:   3'- -CGG-CGaCGGCUUUGGUug--CGGCGaac -5'
13268 5' -55.7 NC_003401.1 + 16826 0.66 0.88415
Target:  5'- gGCCGCuUGCacaacAGCC-GCGCCGCa-- -3'
miRNA:   3'- -CGGCG-ACGgcu--UUGGuUGCGGCGaac -5'
13268 5' -55.7 NC_003401.1 + 20290 0.68 0.821045
Target:  5'- uGCUGCUGgacgacgcgcCCGGGgacGCgGACGCCGCg-- -3'
miRNA:   3'- -CGGCGAC----------GGCUU---UGgUUGCGGCGaac -5'
13268 5' -55.7 NC_003401.1 + 21316 0.68 0.803359
Target:  5'- cGCgGCgguccCCGAAGCCcuGCGCCGCc-- -3'
miRNA:   3'- -CGgCGac---GGCUUUGGu-UGCGGCGaac -5'
13268 5' -55.7 NC_003401.1 + 23640 0.72 0.572977
Target:  5'- cGCCGCgagcgGCCGGcAGgUGGCGCCGCg-- -3'
miRNA:   3'- -CGGCGa----CGGCU-UUgGUUGCGGCGaac -5'
13268 5' -55.7 NC_003401.1 + 23680 0.66 0.897753
Target:  5'- cGCCGCgauuuggcaaaaUGgCGGAccGgCAGCGCCGgUUGg -3'
miRNA:   3'- -CGGCG------------ACgGCUU--UgGUUGCGGCgAAC- -5'
13268 5' -55.7 NC_003401.1 + 23787 0.66 0.869633
Target:  5'- gGCCGCgccgGUuggcggauaauaUGAAACCGGCGCgGCcaUUGg -3'
miRNA:   3'- -CGGCGa---CG------------GCUUUGGUUGCGgCG--AAC- -5'
13268 5' -55.7 NC_003401.1 + 23862 0.66 0.897753
Target:  5'- cGCCGC-GUCc-AACCGGCGCUGCc-- -3'
miRNA:   3'- -CGGCGaCGGcuUUGGUUGCGGCGaac -5'
13268 5' -55.7 NC_003401.1 + 23958 0.7 0.710924
Target:  5'- gGCCGC-GCCGGuuucauauauccgccAACCGGCGCgGCc-- -3'
miRNA:   3'- -CGGCGaCGGCU---------------UUGGUUGCGgCGaac -5'
13268 5' -55.7 NC_003401.1 + 27680 0.69 0.746782
Target:  5'- uGCCgGCUGCguggCGAGACCGGCGUgGUg-- -3'
miRNA:   3'- -CGG-CGACG----GCUUUGGUUGCGgCGaac -5'
13268 5' -55.7 NC_003401.1 + 27713 0.68 0.794273
Target:  5'- cGCCgGCUGCgGggGCgGugGuuGCg-- -3'
miRNA:   3'- -CGG-CGACGgCuuUGgUugCggCGaac -5'
13268 5' -55.7 NC_003401.1 + 27858 0.68 0.803359
Target:  5'- cCCGCaGCCGGcgAGCCAccACGCCGg--- -3'
miRNA:   3'- cGGCGaCGGCU--UUGGU--UGCGGCgaac -5'
13268 5' -55.7 NC_003401.1 + 28225 0.66 0.904201
Target:  5'- cGCCGUUGCCGgcAUCGAgggUGgCGCa-- -3'
miRNA:   3'- -CGGCGACGGCuuUGGUU---GCgGCGaac -5'
13268 5' -55.7 NC_003401.1 + 30169 0.71 0.614182
Target:  5'- gGCCuuUGCCu---CCAGCGCCGCUa- -3'
miRNA:   3'- -CGGcgACGGcuuuGGUUGCGGCGAac -5'
13268 5' -55.7 NC_003401.1 + 30580 0.66 0.897753
Target:  5'- uCCGCU-CUGu-GCCAACGUCGCg-- -3'
miRNA:   3'- cGGCGAcGGCuuUGGUUGCGGCGaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.