miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13273 5' -50.5 NC_003409.1 + 81011 0.67 0.979421
Target:  5'- -cGGCAGACgGGCAGGucaa-AGUCUa -3'
miRNA:   3'- uuUCGUCUGgUUGUCCuacugUCAGG- -5'
13273 5' -50.5 NC_003409.1 + 82552 0.67 0.974023
Target:  5'- --cGCAGgucaauuGCCAgcgGCAGGAUGACGacGUCa -3'
miRNA:   3'- uuuCGUC-------UGGU---UGUCCUACUGU--CAGg -5'
13273 5' -50.5 NC_003409.1 + 91467 0.71 0.876575
Target:  5'- gGAGGCAGACCAuucugACAGGucaacAUGGCGGg-- -3'
miRNA:   3'- -UUUCGUCUGGU-----UGUCC-----UACUGUCagg -5'
13273 5' -50.5 NC_003409.1 + 93794 0.66 0.985078
Target:  5'- cAAAGCAGcCCAGgccaguucagucucCGGGAuuucUGGCAGcCCg -3'
miRNA:   3'- -UUUCGUCuGGUU--------------GUCCU----ACUGUCaGG- -5'
13273 5' -50.5 NC_003409.1 + 98847 0.72 0.835628
Target:  5'- uGAGGCcuuGGgCGACgcaguaAGGGUGGCAGUCCu -3'
miRNA:   3'- -UUUCGu--CUgGUUG------UCCUACUGUCAGG- -5'
13273 5' -50.5 NC_003409.1 + 107629 0.66 0.990286
Target:  5'- -cAGCGGGCC-GCAGGAcGGCgaAGUUg -3'
miRNA:   3'- uuUCGUCUGGuUGUCCUaCUG--UCAGg -5'
13273 5' -50.5 NC_003409.1 + 108762 0.67 0.976965
Target:  5'- --uGguGGCCAACAGGAgGcCGG-CCu -3'
miRNA:   3'- uuuCguCUGGUUGUCCUaCuGUCaGG- -5'
13273 5' -50.5 NC_003409.1 + 108892 0.66 0.991542
Target:  5'- --uGCAGGCCAGCuAGcuggGGCgAGUCCc -3'
miRNA:   3'- uuuCGUCUGGUUG-UCcua-CUG-UCAGG- -5'
13273 5' -50.5 NC_003409.1 + 113868 0.76 0.632788
Target:  5'- uGGGCGGGCCAGgGGGGUagGACGGUgCg -3'
miRNA:   3'- uUUCGUCUGGUUgUCCUA--CUGUCAgG- -5'
13273 5' -50.5 NC_003409.1 + 115213 0.71 0.89129
Target:  5'- --cGCGGACCAgagaaaAUAGGAgcUGACAGaCCc -3'
miRNA:   3'- uuuCGUCUGGU------UGUCCU--ACUGUCaGG- -5'
13273 5' -50.5 NC_003409.1 + 115543 0.66 0.985625
Target:  5'- uGAAGCAGAaguuGCAGG-UGAUGGUgCCu -3'
miRNA:   3'- -UUUCGUCUggu-UGUCCuACUGUCA-GG- -5'
13273 5' -50.5 NC_003409.1 + 115914 0.67 0.981676
Target:  5'- gGAGGCAGAC-----GGAUG-CAGUCCc -3'
miRNA:   3'- -UUUCGUCUGguuguCCUACuGUCAGG- -5'
13273 5' -50.5 NC_003409.1 + 116566 0.67 0.976708
Target:  5'- cGGGCgGGACCGaccgagGCGGGAUGACAagcaucuucugauGUCUc -3'
miRNA:   3'- uUUCG-UCUGGU------UGUCCUACUGU-------------CAGG- -5'
13273 5' -50.5 NC_003409.1 + 119530 0.74 0.729076
Target:  5'- -cGGCGGACCAAUGGGAgcggGGCAGa-- -3'
miRNA:   3'- uuUCGUCUGGUUGUCCUa---CUGUCagg -5'
13273 5' -50.5 NC_003409.1 + 122042 0.67 0.983741
Target:  5'- gGAAGCggguuGGACUGGCAGGGUGGgAGg-- -3'
miRNA:   3'- -UUUCG-----UCUGGUUGUCCUACUgUCagg -5'
13273 5' -50.5 NC_003409.1 + 125075 0.71 0.89129
Target:  5'- uGAGCAGcAgCAGCAGGAUGaACAGg-- -3'
miRNA:   3'- uUUCGUC-UgGUUGUCCUAC-UGUCagg -5'
13273 5' -50.5 NC_003409.1 + 125111 0.7 0.923554
Target:  5'- uGAGCAGcAgCAGCAGGAUGAgCAG-Ca -3'
miRNA:   3'- uUUCGUC-UgGUUGUCCUACU-GUCaGg -5'
13273 5' -50.5 NC_003409.1 + 125147 0.7 0.923554
Target:  5'- uGAGCAGcAgCAGCAGGAUGAgCAG-Ca -3'
miRNA:   3'- uUUCGUC-UgGUUGUCCUACU-GUCaGg -5'
13273 5' -50.5 NC_003409.1 + 125180 0.7 0.904985
Target:  5'- uGAGCAGGagCAGCAGGAUGAgCAG-Ca -3'
miRNA:   3'- uUUCGUCUg-GUUGUCCUACU-GUCaGg -5'
13273 5' -50.5 NC_003409.1 + 125216 0.71 0.868848
Target:  5'- uGAGCAGGagCAGCAGGAUGAgCAGg-- -3'
miRNA:   3'- uUUCGUCUg-GUUGUCCUACU-GUCagg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.