miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13273 5' -50.5 NC_003409.1 + 6385 0.66 0.990286
Target:  5'- -cAGUGGGCCAgGCGGGGgugccaugGACGG-CCg -3'
miRNA:   3'- uuUCGUCUGGU-UGUCCUa-------CUGUCaGG- -5'
13273 5' -50.5 NC_003409.1 + 8750 0.67 0.979421
Target:  5'- --cGCAGGCgCGGCgcacucgaGGGGUGACAccuuucagacGUCCa -3'
miRNA:   3'- uuuCGUCUG-GUUG--------UCCUACUGU----------CAGG- -5'
13273 5' -50.5 NC_003409.1 + 8884 1.09 0.007083
Target:  5'- aAAAGCAGACCAACAGGAUGACAGUCCc -3'
miRNA:   3'- -UUUCGUCUGGUUGUCCUACUGUCAGG- -5'
13273 5' -50.5 NC_003409.1 + 21781 0.67 0.981676
Target:  5'- -cAGC-GACgAGCAGGAUGcccuuGguGUCCa -3'
miRNA:   3'- uuUCGuCUGgUUGUCCUAC-----UguCAGG- -5'
13273 5' -50.5 NC_003409.1 + 23480 0.74 0.729076
Target:  5'- -cGGCGGACCAAUGGGAgcggGGCAGa-- -3'
miRNA:   3'- uuUCGUCUGGUUGUCCUa---CUGUCagg -5'
13273 5' -50.5 NC_003409.1 + 28809 0.67 0.974301
Target:  5'- uGAAGCGGcaGCCA--AGGugacugGGCAGUCCc -3'
miRNA:   3'- -UUUCGUC--UGGUugUCCua----CUGUCAGG- -5'
13273 5' -50.5 NC_003409.1 + 31675 0.7 0.923554
Target:  5'- cAGGGcCAGGCCuAAUGGGGUGugGGggCCa -3'
miRNA:   3'- -UUUC-GUCUGG-UUGUCCUACugUCa-GG- -5'
13273 5' -50.5 NC_003409.1 + 37020 0.66 0.990286
Target:  5'- cAAAGCucGAUCAcgACGGGAUGAU-GUCUc -3'
miRNA:   3'- -UUUCGu-CUGGU--UGUCCUACUGuCAGG- -5'
13273 5' -50.5 NC_003409.1 + 37920 0.66 0.991542
Target:  5'- -uGGCAuGGCCcuuCAGaGAUGGCAGugaaUCCg -3'
miRNA:   3'- uuUCGU-CUGGuu-GUC-CUACUGUC----AGG- -5'
13273 5' -50.5 NC_003409.1 + 40284 0.71 0.898267
Target:  5'- --cGUAGAgUGGCAGGGUaGACgAGUCCg -3'
miRNA:   3'- uuuCGUCUgGUUGUCCUA-CUG-UCAGG- -5'
13273 5' -50.5 NC_003409.1 + 45749 0.67 0.981676
Target:  5'- aGGAGCGGAU--GCAGuGUGGCAG-CCa -3'
miRNA:   3'- -UUUCGUCUGguUGUCcUACUGUCaGG- -5'
13273 5' -50.5 NC_003409.1 + 48585 0.67 0.983741
Target:  5'- -cAGCAGAuuuucCCAcucagugugguuACGGGAUG-CGGUCUg -3'
miRNA:   3'- uuUCGUCU-----GGU------------UGUCCUACuGUCAGG- -5'
13273 5' -50.5 NC_003409.1 + 52021 0.68 0.95757
Target:  5'- cGGAGaAGGCCGGuCAGGAccUGcaACGGUCCa -3'
miRNA:   3'- -UUUCgUCUGGUU-GUCCU--AC--UGUCAGG- -5'
13273 5' -50.5 NC_003409.1 + 56146 0.7 0.92921
Target:  5'- gGGGGCAGugCAcgcacCAGGAUccaGACuGGUCCa -3'
miRNA:   3'- -UUUCGUCugGUu----GUCCUA---CUG-UCAGG- -5'
13273 5' -50.5 NC_003409.1 + 63089 0.68 0.964974
Target:  5'- cAAGGCGGGgCAccACAGGGUGGgGGUa- -3'
miRNA:   3'- -UUUCGUCUgGU--UGUCCUACUgUCAgg -5'
13273 5' -50.5 NC_003409.1 + 67922 0.66 0.991542
Target:  5'- ---uCGGACUcuGAUAGcGAUGACAGuUCCa -3'
miRNA:   3'- uuucGUCUGG--UUGUC-CUACUGUC-AGG- -5'
13273 5' -50.5 NC_003409.1 + 70577 0.7 0.904985
Target:  5'- --uGCccauGGgCGGguGGGUGACAGUCCg -3'
miRNA:   3'- uuuCGu---CUgGUUguCCUACUGUCAGG- -5'
13273 5' -50.5 NC_003409.1 + 74264 0.67 0.974301
Target:  5'- cGAAGCGGGCCcugaAACauGGGAUGuCGGgucgCCu -3'
miRNA:   3'- -UUUCGUCUGG----UUG--UCCUACuGUCa---GG- -5'
13273 5' -50.5 NC_003409.1 + 74524 0.7 0.92921
Target:  5'- gGAGGguGACC-GCAGaggcGGUGGCGuGUCCa -3'
miRNA:   3'- -UUUCguCUGGuUGUC----CUACUGU-CAGG- -5'
13273 5' -50.5 NC_003409.1 + 80612 0.74 0.729076
Target:  5'- --uGguGGCCAACAGGcUGGCcguGUCCu -3'
miRNA:   3'- uuuCguCUGGUUGUCCuACUGu--CAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.