Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13273 | 5' | -50.5 | NC_003409.1 | + | 8884 | 1.09 | 0.007083 |
Target: 5'- aAAAGCAGACCAACAGGAUGACAGUCCc -3' miRNA: 3'- -UUUCGUCUGGUUGUCCUACUGUCAGG- -5' |
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13273 | 5' | -50.5 | NC_003409.1 | + | 113868 | 0.76 | 0.632788 |
Target: 5'- uGGGCGGGCCAGgGGGGUagGACGGUgCg -3' miRNA: 3'- uUUCGUCUGGUUgUCCUA--CUGUCAgG- -5' |
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13273 | 5' | -50.5 | NC_003409.1 | + | 119530 | 0.74 | 0.729076 |
Target: 5'- -cGGCGGACCAAUGGGAgcggGGCAGa-- -3' miRNA: 3'- uuUCGUCUGGUUGUCCUa---CUGUCagg -5' |
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13273 | 5' | -50.5 | NC_003409.1 | + | 80612 | 0.74 | 0.729076 |
Target: 5'- --uGguGGCCAACAGGcUGGCcguGUCCu -3' miRNA: 3'- uuuCguCUGGUUGUCCuACUGu--CAGG- -5' |
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13273 | 5' | -50.5 | NC_003409.1 | + | 23480 | 0.74 | 0.729076 |
Target: 5'- -cGGCGGACCAAUGGGAgcggGGCAGa-- -3' miRNA: 3'- uuUCGUCUGGUUGUCCUa---CUGUCagg -5' |
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13273 | 5' | -50.5 | NC_003409.1 | + | 133538 | 0.73 | 0.816827 |
Target: 5'- -cAGCAGGCCGagaugcuGCAGGAgcGGgAGUCCc -3' miRNA: 3'- uuUCGUCUGGU-------UGUCCUa-CUgUCAGG- -5' |
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13273 | 5' | -50.5 | NC_003409.1 | + | 98847 | 0.72 | 0.835628 |
Target: 5'- uGAGGCcuuGGgCGACgcaguaAGGGUGGCAGUCCu -3' miRNA: 3'- -UUUCGu--CUgGUUG------UCCUACUGUCAGG- -5' |
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13273 | 5' | -50.5 | NC_003409.1 | + | 125216 | 0.71 | 0.868848 |
Target: 5'- uGAGCAGGagCAGCAGGAUGAgCAGg-- -3' miRNA: 3'- uUUCGUCUg-GUUGUCCUACU-GUCagg -5' |
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13273 | 5' | -50.5 | NC_003409.1 | + | 91467 | 0.71 | 0.876575 |
Target: 5'- gGAGGCAGACCAuucugACAGGucaacAUGGCGGg-- -3' miRNA: 3'- -UUUCGUCUGGU-----UGUCC-----UACUGUCagg -5' |
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13273 | 5' | -50.5 | NC_003409.1 | + | 125075 | 0.71 | 0.89129 |
Target: 5'- uGAGCAGcAgCAGCAGGAUGaACAGg-- -3' miRNA: 3'- uUUCGUC-UgGUUGUCCUAC-UGUCagg -5' |
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13273 | 5' | -50.5 | NC_003409.1 | + | 115213 | 0.71 | 0.89129 |
Target: 5'- --cGCGGACCAgagaaaAUAGGAgcUGACAGaCCc -3' miRNA: 3'- uuuCGUCUGGU------UGUCCU--ACUGUCaGG- -5' |
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13273 | 5' | -50.5 | NC_003409.1 | + | 40284 | 0.71 | 0.898267 |
Target: 5'- --cGUAGAgUGGCAGGGUaGACgAGUCCg -3' miRNA: 3'- uuuCGUCUgGUUGUCCUA-CUG-UCAGG- -5' |
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13273 | 5' | -50.5 | NC_003409.1 | + | 125180 | 0.7 | 0.904985 |
Target: 5'- uGAGCAGGagCAGCAGGAUGAgCAG-Ca -3' miRNA: 3'- uUUCGUCUg-GUUGUCCUACU-GUCaGg -5' |
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13273 | 5' | -50.5 | NC_003409.1 | + | 70577 | 0.7 | 0.904985 |
Target: 5'- --uGCccauGGgCGGguGGGUGACAGUCCg -3' miRNA: 3'- uuuCGu---CUgGUUguCCUACUGUCAGG- -5' |
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13273 | 5' | -50.5 | NC_003409.1 | + | 31675 | 0.7 | 0.923554 |
Target: 5'- cAGGGcCAGGCCuAAUGGGGUGugGGggCCa -3' miRNA: 3'- -UUUC-GUCUGG-UUGUCCUACugUCa-GG- -5' |
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13273 | 5' | -50.5 | NC_003409.1 | + | 125147 | 0.7 | 0.923554 |
Target: 5'- uGAGCAGcAgCAGCAGGAUGAgCAG-Ca -3' miRNA: 3'- uUUCGUC-UgGUUGUCCUACU-GUCaGg -5' |
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13273 | 5' | -50.5 | NC_003409.1 | + | 125111 | 0.7 | 0.923554 |
Target: 5'- uGAGCAGcAgCAGCAGGAUGAgCAG-Ca -3' miRNA: 3'- uUUCGUC-UgGUUGUCCUACU-GUCaGg -5' |
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13273 | 5' | -50.5 | NC_003409.1 | + | 56146 | 0.7 | 0.92921 |
Target: 5'- gGGGGCAGugCAcgcacCAGGAUccaGACuGGUCCa -3' miRNA: 3'- -UUUCGUCugGUu----GUCCUA---CUG-UCAGG- -5' |
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13273 | 5' | -50.5 | NC_003409.1 | + | 74524 | 0.7 | 0.92921 |
Target: 5'- gGAGGguGACC-GCAGaggcGGUGGCGuGUCCa -3' miRNA: 3'- -UUUCguCUGGuUGUC----CUACUGU-CAGG- -5' |
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13273 | 5' | -50.5 | NC_003409.1 | + | 52021 | 0.68 | 0.95757 |
Target: 5'- cGGAGaAGGCCGGuCAGGAccUGcaACGGUCCa -3' miRNA: 3'- -UUUCgUCUGGUU-GUCCU--AC--UGUCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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