Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13273 | 5' | -50.5 | NC_003409.1 | + | 119530 | 0.74 | 0.729076 |
Target: 5'- -cGGCGGACCAAUGGGAgcggGGCAGa-- -3' miRNA: 3'- uuUCGUCUGGUUGUCCUa---CUGUCagg -5' |
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13273 | 5' | -50.5 | NC_003409.1 | + | 63089 | 0.68 | 0.964974 |
Target: 5'- cAAGGCGGGgCAccACAGGGUGGgGGUa- -3' miRNA: 3'- -UUUCGUCUgGU--UGUCCUACUgUCAgg -5' |
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13273 | 5' | -50.5 | NC_003409.1 | + | 82552 | 0.67 | 0.974023 |
Target: 5'- --cGCAGgucaauuGCCAgcgGCAGGAUGACGacGUCa -3' miRNA: 3'- uuuCGUC-------UGGU---UGUCCUACUGU--CAGg -5' |
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13273 | 5' | -50.5 | NC_003409.1 | + | 6385 | 0.66 | 0.990286 |
Target: 5'- -cAGUGGGCCAgGCGGGGgugccaugGACGG-CCg -3' miRNA: 3'- uuUCGUCUGGU-UGUCCUa-------CUGUCaGG- -5' |
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13273 | 5' | -50.5 | NC_003409.1 | + | 74264 | 0.67 | 0.974301 |
Target: 5'- cGAAGCGGGCCcugaAACauGGGAUGuCGGgucgCCu -3' miRNA: 3'- -UUUCGUCUGG----UUG--UCCUACuGUCa---GG- -5' |
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13273 | 5' | -50.5 | NC_003409.1 | + | 56146 | 0.7 | 0.92921 |
Target: 5'- gGGGGCAGugCAcgcacCAGGAUccaGACuGGUCCa -3' miRNA: 3'- -UUUCGUCugGUu----GUCCUA---CUG-UCAGG- -5' |
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13273 | 5' | -50.5 | NC_003409.1 | + | 8750 | 0.67 | 0.979421 |
Target: 5'- --cGCAGGCgCGGCgcacucgaGGGGUGACAccuuucagacGUCCa -3' miRNA: 3'- uuuCGUCUG-GUUG--------UCCUACUGU----------CAGG- -5' |
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13273 | 5' | -50.5 | NC_003409.1 | + | 21781 | 0.67 | 0.981676 |
Target: 5'- -cAGC-GACgAGCAGGAUGcccuuGguGUCCa -3' miRNA: 3'- uuUCGuCUGgUUGUCCUAC-----UguCAGG- -5' |
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13273 | 5' | -50.5 | NC_003409.1 | + | 93794 | 0.66 | 0.985078 |
Target: 5'- cAAAGCAGcCCAGgccaguucagucucCGGGAuuucUGGCAGcCCg -3' miRNA: 3'- -UUUCGUCuGGUU--------------GUCCU----ACUGUCaGG- -5' |
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13273 | 5' | -50.5 | NC_003409.1 | + | 70577 | 0.7 | 0.904985 |
Target: 5'- --uGCccauGGgCGGguGGGUGACAGUCCg -3' miRNA: 3'- uuuCGu---CUgGUUguCCUACUGUCAGG- -5' |
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13273 | 5' | -50.5 | NC_003409.1 | + | 40284 | 0.71 | 0.898267 |
Target: 5'- --cGUAGAgUGGCAGGGUaGACgAGUCCg -3' miRNA: 3'- uuuCGUCUgGUUGUCCUA-CUG-UCAGG- -5' |
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13273 | 5' | -50.5 | NC_003409.1 | + | 31675 | 0.7 | 0.923554 |
Target: 5'- cAGGGcCAGGCCuAAUGGGGUGugGGggCCa -3' miRNA: 3'- -UUUC-GUCUGG-UUGUCCUACugUCa-GG- -5' |
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13273 | 5' | -50.5 | NC_003409.1 | + | 108762 | 0.67 | 0.976965 |
Target: 5'- --uGguGGCCAACAGGAgGcCGG-CCu -3' miRNA: 3'- uuuCguCUGGUUGUCCUaCuGUCaGG- -5' |
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13273 | 5' | -50.5 | NC_003409.1 | + | 128018 | 0.67 | 0.978946 |
Target: 5'- cAAAGCAGACacgccuucuuCAGuuuuuAUGGCAGUCCu -3' miRNA: 3'- -UUUCGUCUGguu-------GUCc----UACUGUCAGG- -5' |
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13273 | 5' | -50.5 | NC_003409.1 | + | 81011 | 0.67 | 0.979421 |
Target: 5'- -cGGCAGACgGGCAGGucaa-AGUCUa -3' miRNA: 3'- uuUCGUCUGgUUGUCCuacugUCAGG- -5' |
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13273 | 5' | -50.5 | NC_003409.1 | + | 115914 | 0.67 | 0.981676 |
Target: 5'- gGAGGCAGAC-----GGAUG-CAGUCCc -3' miRNA: 3'- -UUUCGUCUGguuguCCUACuGUCAGG- -5' |
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13273 | 5' | -50.5 | NC_003409.1 | + | 45749 | 0.67 | 0.981676 |
Target: 5'- aGGAGCGGAU--GCAGuGUGGCAG-CCa -3' miRNA: 3'- -UUUCGUCUGguUGUCcUACUGUCaGG- -5' |
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13273 | 5' | -50.5 | NC_003409.1 | + | 132584 | 0.66 | 0.987337 |
Target: 5'- --uGCuGGCCGAgAGGGUGGC-GcCCa -3' miRNA: 3'- uuuCGuCUGGUUgUCCUACUGuCaGG- -5' |
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13273 | 5' | -50.5 | NC_003409.1 | + | 125538 | 0.66 | 0.990286 |
Target: 5'- -cAGCGGAgCCAcagcaGCAGGAUGAgCAG-Ca -3' miRNA: 3'- uuUCGUCU-GGU-----UGUCCUACU-GUCaGg -5' |
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13273 | 5' | -50.5 | NC_003409.1 | + | 108892 | 0.66 | 0.991542 |
Target: 5'- --uGCAGGCCAGCuAGcuggGGCgAGUCCc -3' miRNA: 3'- uuuCGUCUGGUUG-UCcua-CUG-UCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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