miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13277 3' -56.1 NC_003409.1 + 96858 0.74 0.45936
Target:  5'- aGGGGGCAcGCUUCuGGCGgaggcguGCCAAAuAUGg -3'
miRNA:   3'- -CCCCCGU-CGAGGuCCGC-------UGGUUU-UAC- -5'
13277 3' -56.1 NC_003409.1 + 97164 0.68 0.802751
Target:  5'- aGGGaGGCAGUgaauauugagaUUCgguuuauccaggccaAGGCGGCCGGGGUGa -3'
miRNA:   3'- -CCC-CCGUCG-----------AGG---------------UCCGCUGGUUUUAC- -5'
13277 3' -56.1 NC_003409.1 + 100065 0.67 0.825613
Target:  5'- cGGGGCGGC-UguGGC-ACCAAAuuAUGg -3'
miRNA:   3'- cCCCCGUCGaGguCCGcUGGUUU--UAC- -5'
13277 3' -56.1 NC_003409.1 + 103638 0.68 0.780698
Target:  5'- aGGGGGCGGCUggcgggUCGGGUGuCCu----- -3'
miRNA:   3'- -CCCCCGUCGA------GGUCCGCuGGuuuuac -5'
13277 3' -56.1 NC_003409.1 + 105042 0.66 0.88778
Target:  5'- uGGGGGCugguGCUCgucuGGUGGCU--GGUGg -3'
miRNA:   3'- -CCCCCGu---CGAGgu--CCGCUGGuuUUAC- -5'
13277 3' -56.1 NC_003409.1 + 113193 0.66 0.88778
Target:  5'- aGGGGCGGCagauaccggccUCCGGGaGGCCuuGGa- -3'
miRNA:   3'- cCCCCGUCG-----------AGGUCCgCUGGuuUUac -5'
13277 3' -56.1 NC_003409.1 + 115364 0.7 0.640608
Target:  5'- cGGGGCAuGCUCaCAGGC-ACCAu---- -3'
miRNA:   3'- cCCCCGU-CGAG-GUCCGcUGGUuuuac -5'
13277 3' -56.1 NC_003409.1 + 121963 0.67 0.83409
Target:  5'- aGGGuGCGGUgcugcCCAGGaCGGCCGGAu-- -3'
miRNA:   3'- cCCC-CGUCGa----GGUCC-GCUGGUUUuac -5'
13277 3' -56.1 NC_003409.1 + 123791 0.66 0.88778
Target:  5'- aGGGGGUgacuAGCUucCCAGGCuaggcgGGCCAu---- -3'
miRNA:   3'- -CCCCCG----UCGA--GGUCCG------CUGGUuuuac -5'
13277 3' -56.1 NC_003409.1 + 128612 0.7 0.650951
Target:  5'- aGGGuGCGGC-CCAGGUGACauuggGGGGUGg -3'
miRNA:   3'- cCCC-CGUCGaGGUCCGCUGg----UUUUAC- -5'
13277 3' -56.1 NC_003409.1 + 131221 0.68 0.780698
Target:  5'- cGGGGCAcuGCUcCCAGGCaGcACCAAc--- -3'
miRNA:   3'- cCCCCGU--CGA-GGUCCG-C-UGGUUuuac -5'
13277 3' -56.1 NC_003409.1 + 134467 0.68 0.77127
Target:  5'- cGGGGGCGGUgcgcccUCUAGGCauGGCCu----- -3'
miRNA:   3'- -CCCCCGUCG------AGGUCCG--CUGGuuuuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.