Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13277 | 3' | -56.1 | NC_003409.1 | + | 56145 | 0.69 | 0.712371 |
Target: 5'- uGGGGGCAGUgcacgcaCCAGGau-CCAGAcUGg -3' miRNA: 3'- -CCCCCGUCGa------GGUCCgcuGGUUUuAC- -5' |
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13277 | 3' | -56.1 | NC_003409.1 | + | 54401 | 0.66 | 0.88076 |
Target: 5'- --uGGUcgAGUaCCAGGCGGCCAGAAa- -3' miRNA: 3'- cccCCG--UCGaGGUCCGCUGGUUUUac -5' |
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13277 | 3' | -56.1 | NC_003409.1 | + | 47610 | 0.75 | 0.40604 |
Target: 5'- aGGGGGUGGUgCCagaugAGGUGACCAGGAUa -3' miRNA: 3'- -CCCCCGUCGaGG-----UCCGCUGGUUUUAc -5' |
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13277 | 3' | -56.1 | NC_003409.1 | + | 43990 | 0.66 | 0.88778 |
Target: 5'- aGGGGCguagaauccccGGCcaUCCAGuCGACCGAGAc- -3' miRNA: 3'- cCCCCG-----------UCG--AGGUCcGCUGGUUUUac -5' |
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13277 | 3' | -56.1 | NC_003409.1 | + | 42714 | 0.67 | 0.808127 |
Target: 5'- aGGGGGCccucgAGCgcugCCauggAGGCGACCuuGGa- -3' miRNA: 3'- -CCCCCG-----UCGa---GG----UCCGCUGGuuUUac -5' |
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13277 | 3' | -56.1 | NC_003409.1 | + | 24738 | 0.68 | 0.75107 |
Target: 5'- aGGGGGCgcgccggGGCUCCugGGGUGcuGCCGGGGc- -3' miRNA: 3'- -CCCCCG-------UCGAGG--UCCGC--UGGUUUUac -5' |
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13277 | 3' | -56.1 | NC_003409.1 | + | 22610 | 0.71 | 0.588959 |
Target: 5'- uGGGGCuGCUCUucuGGGUGGCCGuGAUu -3' miRNA: 3'- cCCCCGuCGAGG---UCCGCUGGUuUUAc -5' |
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13277 | 3' | -56.1 | NC_003409.1 | + | 19651 | 0.69 | 0.742263 |
Target: 5'- -aGGGCAcGCgUCCAGGCaACCGGGGUc -3' miRNA: 3'- ccCCCGU-CG-AGGUCCGcUGGUUUUAc -5' |
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13277 | 3' | -56.1 | NC_003409.1 | + | 19141 | 1.11 | 0.001583 |
Target: 5'- cGGGGGCAGCUCCAGGCGACCAAAAUGg -3' miRNA: 3'- -CCCCCGUCGAGGUCCGCUGGUUUUAC- -5' |
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13277 | 3' | -56.1 | NC_003409.1 | + | 19108 | 1.12 | 0.001539 |
Target: 5'- cGGGGGCAGCUCCAGGCGACCAAGAUGg -3' miRNA: 3'- -CCCCCGUCGAGGUCCGCUGGUUUUAC- -5' |
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13277 | 3' | -56.1 | NC_003409.1 | + | 9084 | 0.66 | 0.858364 |
Target: 5'- -uGGGCAcgucuGCUCCAGGUugaACCGAAAa- -3' miRNA: 3'- ccCCCGU-----CGAGGUCCGc--UGGUUUUac -5' |
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13277 | 3' | -56.1 | NC_003409.1 | + | 3022 | 0.66 | 0.858364 |
Target: 5'- aGGGGGCGGCguuUCCAuaugaGGCCAAGu-- -3' miRNA: 3'- -CCCCCGUCG---AGGUccg--CUGGUUUuac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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