Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
13279 | 5' | -50.1 | NC_003409.1 | + | 92251 | 0.66 | 0.994311 |
Target: 5'- uUAUUGGAaUACCCAGCauacuuuguUGGaaAUGCa -3' miRNA: 3'- gAUGACCUaAUGGGUCG---------ACCcaUAUG- -5' |
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13279 | 5' | -50.1 | NC_003409.1 | + | 131508 | 0.66 | 0.991186 |
Target: 5'- ----cGGGgccaacggUGCCCAG-UGGGUGUGCc -3' miRNA: 3'- gaugaCCUa-------AUGGGUCgACCCAUAUG- -5' |
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13279 | 5' | -50.1 | NC_003409.1 | + | 27271 | 0.67 | 0.988442 |
Target: 5'- gCUGCUGGA--ACCCguagcagcAGCUauuaGGcGUGUACg -3' miRNA: 3'- -GAUGACCUaaUGGG--------UCGA----CC-CAUAUG- -5' |
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13279 | 5' | -50.1 | NC_003409.1 | + | 131100 | 0.67 | 0.985077 |
Target: 5'- gCUGCUGGug-GCCC---UGGGUGUAg -3' miRNA: 3'- -GAUGACCuaaUGGGucgACCCAUAUg -5' |
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13279 | 5' | -50.1 | NC_003409.1 | + | 51195 | 0.67 | 0.985077 |
Target: 5'- gUACUGGGggagGCCCAagGC-GGGUAcGCc -3' miRNA: 3'- gAUGACCUaa--UGGGU--CGaCCCAUaUG- -5' |
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13279 | 5' | -50.1 | NC_003409.1 | + | 130755 | 0.68 | 0.978693 |
Target: 5'- --cCUGG---GCCCAGCUGGGca-GCa -3' miRNA: 3'- gauGACCuaaUGGGUCGACCCauaUG- -5' |
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13279 | 5' | -50.1 | NC_003409.1 | + | 11998 | 0.68 | 0.977205 |
Target: 5'- cCUGCUGGAggacgugggucagguUUACCCc-CUGGG-GUGCu -3' miRNA: 3'- -GAUGACCU---------------AAUGGGucGACCCaUAUG- -5' |
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13279 | 5' | -50.1 | NC_003409.1 | + | 129078 | 0.68 | 0.973437 |
Target: 5'- ----cGGAggauCCUAGgUGGGUGUGCa -3' miRNA: 3'- gaugaCCUaau-GGGUCgACCCAUAUG- -5' |
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13279 | 5' | -50.1 | NC_003409.1 | + | 130925 | 0.68 | 0.970482 |
Target: 5'- uUGCgggGGAcggugcUGCCCAGCUGGGc---- -3' miRNA: 3'- gAUGa--CCUa-----AUGGGUCGACCCauaug -5' |
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13279 | 5' | -50.1 | NC_003409.1 | + | 119064 | 0.69 | 0.94773 |
Target: 5'- -cGCUGGuAUU-CCCAGCUGaGGU-UGCc -3' miRNA: 3'- gaUGACC-UAAuGGGUCGAC-CCAuAUG- -5' |
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13279 | 5' | -50.1 | NC_003409.1 | + | 23915 | 0.69 | 0.94773 |
Target: 5'- -cGCUGGuAUU-CCCAGCUGaGGU-UGCc -3' miRNA: 3'- gaUGACC-UAAuGGGUCGAC-CCAuAUG- -5' |
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13279 | 5' | -50.1 | NC_003409.1 | + | 23613 | 0.72 | 0.866183 |
Target: 5'- ----aGGuaUACCCAGCUGGGUAa-- -3' miRNA: 3'- gaugaCCuaAUGGGUCGACCCAUaug -5' |
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13279 | 5' | -50.1 | NC_003409.1 | + | 119345 | 0.73 | 0.80431 |
Target: 5'- -aGCUGGGUauacgcagcugcgUaaACCCGGCUGGGUAa-- -3' miRNA: 3'- gaUGACCUA-------------A--UGGGUCGACCCAUaug -5' |
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13279 | 5' | -50.1 | NC_003409.1 | + | 119387 | 0.74 | 0.776307 |
Target: 5'- -aGCUGGGUcUACCCAGCUGcGUAaACc -3' miRNA: 3'- gaUGACCUA-AUGGGUCGACcCAUaUG- -5' |
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13279 | 5' | -50.1 | NC_003409.1 | + | 119163 | 0.82 | 0.377459 |
Target: 5'- -aGCUGGAuUUACCCAGCcGGGUuUACg -3' miRNA: 3'- gaUGACCU-AAUGGGUCGaCCCAuAUG- -5' |
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13279 | 5' | -50.1 | NC_003409.1 | + | 23816 | 0.85 | 0.262495 |
Target: 5'- -aGCUGGGUaUACCCAGCUGGGUucACc -3' miRNA: 3'- gaUGACCUA-AUGGGUCGACCCAuaUG- -5' |
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13279 | 5' | -50.1 | NC_003409.1 | + | 23649 | 0.85 | 0.262495 |
Target: 5'- -aGgUGGGUgaACCCAGCUGGGUAUACc -3' miRNA: 3'- gaUgACCUAa-UGGGUCGACCCAUAUG- -5' |
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13279 | 5' | -50.1 | NC_003409.1 | + | 119233 | 0.94 | 0.071233 |
Target: 5'- -aGCUGGGUagACCCAGCUGGGUAUACc -3' miRNA: 3'- gaUGACCUAa-UGGGUCGACCCAUAUG- -5' |
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13279 | 5' | -50.1 | NC_003409.1 | + | 23777 | 1.1 | 0.007595 |
Target: 5'- cCUACUGGAUUACCCAGCUGGGUAUACc -3' miRNA: 3'- -GAUGACCUAAUGGGUCGACCCAUAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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