Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13280 | 3' | -58 | NC_003409.1 | + | 119818 | 0.66 | 0.825344 |
Target: 5'- -gCGCCCGGGuGCacGGGGUcaccUCCAGGUCa -3' miRNA: 3'- ugGUGGGUCUcCG--CUCUA----AGGUCCGG- -5' |
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13280 | 3' | -58 | NC_003409.1 | + | 24162 | 1.1 | 0.001381 |
Target: 5'- aACCACCCAGAGGCGAGAUUCCAGGCCc -3' miRNA: 3'- -UGGUGGGUCUCCGCUCUAAGGUCCGG- -5' |
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13280 | 3' | -58 | NC_003409.1 | + | 82439 | 0.82 | 0.118235 |
Target: 5'- uGCgGCCCAGgggGGGUGGGAUUCCcuGGGCCg -3' miRNA: 3'- -UGgUGGGUC---UCCGCUCUAAGG--UCCGG- -5' |
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13280 | 3' | -58 | NC_003409.1 | + | 34906 | 0.74 | 0.378181 |
Target: 5'- aACCGaagauggaCAGAGGCGGGAagaUUCUGGGCCc -3' miRNA: 3'- -UGGUgg------GUCUCCGCUCU---AAGGUCCGG- -5' |
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13280 | 3' | -58 | NC_003409.1 | + | 63974 | 0.73 | 0.420522 |
Target: 5'- gACCACUCAGGGGCucAGGcgCCAGGUg -3' miRNA: 3'- -UGGUGGGUCUCCGc-UCUaaGGUCCGg -5' |
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13280 | 3' | -58 | NC_003409.1 | + | 52337 | 0.71 | 0.542479 |
Target: 5'- cACUaaGCCCGGuGGCGGGGgcaCGGGCUc -3' miRNA: 3'- -UGG--UGGGUCuCCGCUCUaagGUCCGG- -5' |
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13280 | 3' | -58 | NC_003409.1 | + | 128529 | 0.69 | 0.643452 |
Target: 5'- uGCCGugUCCAGuaGGGgGAGAUgucacuUCCAGGCa -3' miRNA: 3'- -UGGU--GGGUC--UCCgCUCUA------AGGUCCGg -5' |
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13280 | 3' | -58 | NC_003409.1 | + | 52575 | 0.67 | 0.724861 |
Target: 5'- gGCgGCCaAGGGGCGGGGacguggcagcucuuaUCCAGGCa -3' miRNA: 3'- -UGgUGGgUCUCCGCUCUa--------------AGGUCCGg -5' |
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13280 | 3' | -58 | NC_003409.1 | + | 24229 | 0.67 | 0.733672 |
Target: 5'- aGCCACCCAuguucuGGGGCGcgccagcGGUgggCgGGGCCc -3' miRNA: 3'- -UGGUGGGU------CUCCGCu------CUAa--GgUCCGG- -5' |
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13280 | 3' | -58 | NC_003409.1 | + | 74578 | 0.67 | 0.756808 |
Target: 5'- uCCA-CCAGaAGGUGAcGGUauauccgccggagacUCCGGGCCg -3' miRNA: 3'- uGGUgGGUC-UCCGCU-CUA---------------AGGUCCGG- -5' |
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13280 | 3' | -58 | NC_003409.1 | + | 48796 | 0.67 | 0.77189 |
Target: 5'- uUgGgCCAGGGGUcacAGuUUCCAGGCCg -3' miRNA: 3'- uGgUgGGUCUCCGc--UCuAAGGUCCGG- -5' |
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13280 | 3' | -58 | NC_003409.1 | + | 22147 | 0.66 | 0.781158 |
Target: 5'- aACCGCCCcugcggucacGGGGGCGuGGAUUUUuugggguguuGGCCu -3' miRNA: 3'- -UGGUGGG----------UCUCCGC-UCUAAGGu---------CCGG- -5' |
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13280 | 3' | -58 | NC_003409.1 | + | 128643 | 0.66 | 0.790294 |
Target: 5'- aACUGCUCcuggguagaAGAGGCGuuGUUCCAGGgUg -3' miRNA: 3'- -UGGUGGG---------UCUCCGCucUAAGGUCCgG- -5' |
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13280 | 3' | -58 | NC_003409.1 | + | 51666 | 0.66 | 0.808135 |
Target: 5'- cACCACCaaccGGCGGGAUgacCCuGGCg -3' miRNA: 3'- -UGGUGGgucuCCGCUCUAa--GGuCCGg -5' |
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13280 | 3' | -58 | NC_003409.1 | + | 24654 | 0.69 | 0.62309 |
Target: 5'- cGCCACCCuccccGGAGG-GGGAUcCCGGcgcGCCa -3' miRNA: 3'- -UGGUGGG-----UCUCCgCUCUAaGGUC---CGG- -5' |
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13280 | 3' | -58 | NC_003409.1 | + | 24594 | 0.69 | 0.62309 |
Target: 5'- cGCCACCCuccccGGAGG-GGGAUcCCGGcgcGCCa -3' miRNA: 3'- -UGGUGGG-----UCUCCgCUCUAaGGUC---CGG- -5' |
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13280 | 3' | -58 | NC_003409.1 | + | 118745 | 0.71 | 0.522801 |
Target: 5'- gGCCGCgCCAGAGGUGAGGUggacCUAGcaucCCg -3' miRNA: 3'- -UGGUG-GGUCUCCGCUCUAa---GGUCc---GG- -5' |
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13280 | 3' | -58 | NC_003409.1 | + | 12590 | 0.73 | 0.420522 |
Target: 5'- cACCaACCCAGAGGCGG--UUCCgauggGGGCa -3' miRNA: 3'- -UGG-UGGGUCUCCGCUcuAAGG-----UCCGg -5' |
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13280 | 3' | -58 | NC_003409.1 | + | 68679 | 0.74 | 0.370064 |
Target: 5'- gGCCACCaagAGAGGCcagcgGAGAUggaugCUGGGCCg -3' miRNA: 3'- -UGGUGGg--UCUCCG-----CUCUAa----GGUCCGG- -5' |
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13280 | 3' | -58 | NC_003409.1 | + | 23191 | 0.66 | 0.825344 |
Target: 5'- -gCGCCCGGGuGCacGGGGUcaccUCCAGGUCa -3' miRNA: 3'- ugGUGGGUCUcCG--CUCUA----AGGUCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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