miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13281 3' -52.3 NC_003409.1 + 8943 0.69 0.890778
Target:  5'- gGGUGuGGGgGAAcuggacgucugaaagGUGUCACCccucGAGUGCg -3'
miRNA:   3'- -CCAC-CCCgUUUa--------------CACAGUGG----UUCGCG- -5'
13281 3' -52.3 NC_003409.1 + 10085 0.72 0.800147
Target:  5'- cGUGGGGUucccgcUGUCGCCcuGAGCGUg -3'
miRNA:   3'- cCACCCCGuuuac-ACAGUGG--UUCGCG- -5'
13281 3' -52.3 NC_003409.1 + 11675 0.66 0.977105
Target:  5'- aGGUGGGuGgAAAUGUgGUguccacggcaaccaCGCCGGGuCGCc -3'
miRNA:   3'- -CCACCC-CgUUUACA-CA--------------GUGGUUC-GCG- -5'
13281 3' -52.3 NC_003409.1 + 12020 0.68 0.925767
Target:  5'- uGUGGGuGCGAgguguuugaguccaAUGUGgaCGCCAuuaGGCGCu -3'
miRNA:   3'- cCACCC-CGUU--------------UACACa-GUGGU---UCGCG- -5'
13281 3' -52.3 NC_003409.1 + 13330 0.66 0.972593
Target:  5'- uGUGGGuGCAGGUGgagcgaaUCGCCGGGUa- -3'
miRNA:   3'- cCACCC-CGUUUACac-----AGUGGUUCGcg -5'
13281 3' -52.3 NC_003409.1 + 22421 0.68 0.94267
Target:  5'- --cGGGGCGGAaaguaUGcggGUCGCCugcgaagcGGCGCa -3'
miRNA:   3'- ccaCCCCGUUU-----ACa--CAGUGGu-------UCGCG- -5'
13281 3' -52.3 NC_003409.1 + 23579 0.66 0.972593
Target:  5'- cGGcUGGGGCGuccaauggAAUGgcgcgGUCGCCuAGCu- -3'
miRNA:   3'- -CC-ACCCCGU--------UUACa----CAGUGGuUCGcg -5'
13281 3' -52.3 NC_003409.1 + 30105 1.14 0.002746
Target:  5'- cGGUGGGGCAAAUGUGUCACCAAGCGCc -3'
miRNA:   3'- -CCACCCCGUUUACACAGUGGUUCGCG- -5'
13281 3' -52.3 NC_003409.1 + 33269 0.66 0.972593
Target:  5'- gGGUGGGGaUggGUGUGaaAgCAGGaCGUc -3'
miRNA:   3'- -CCACCCC-GuuUACACagUgGUUC-GCG- -5'
13281 3' -52.3 NC_003409.1 + 36132 0.66 0.977841
Target:  5'- gGGUGuGGGCAAAUcaacgcugGUCaacGCCGuGUGCg -3'
miRNA:   3'- -CCAC-CCCGUUUAca------CAG---UGGUuCGCG- -5'
13281 3' -52.3 NC_003409.1 + 45933 0.7 0.852335
Target:  5'- --gGGGGCAGAUaguuuuugGUGcaugcUCACCAuGGCGCu -3'
miRNA:   3'- ccaCCCCGUUUA--------CAC-----AGUGGU-UCGCG- -5'
13281 3' -52.3 NC_003409.1 + 46175 0.69 0.896928
Target:  5'- uGGgccGGGGCGaugacuGAUGaGUaGCCAAGUGCg -3'
miRNA:   3'- -CCa--CCCCGU------UUACaCAgUGGUUCGCG- -5'
13281 3' -52.3 NC_003409.1 + 53203 0.66 0.975319
Target:  5'- uGGcucgGGGGCGGAUcgGUGUgGCUgcuguucuuGGGCGUg -3'
miRNA:   3'- -CCa---CCCCGUUUA--CACAgUGG---------UUCGCG- -5'
13281 3' -52.3 NC_003409.1 + 59908 0.66 0.977841
Target:  5'- gGGUcGGGGUGAG-GUGcuUCGCUGAguuGCGCa -3'
miRNA:   3'- -CCA-CCCCGUUUaCAC--AGUGGUU---CGCG- -5'
13281 3' -52.3 NC_003409.1 + 69845 0.7 0.849893
Target:  5'- -aUGGGGCAAAuccggguucacccuUGUGUUGCCugguucGGUGCu -3'
miRNA:   3'- ccACCCCGUUU--------------ACACAGUGGu-----UCGCG- -5'
13281 3' -52.3 NC_003409.1 + 71558 0.69 0.909879
Target:  5'- gGGcGGGGCuuAAUGaGUCGCCGGuaGCu -3'
miRNA:   3'- -CCaCCCCGu-UUACaCAGUGGUUcgCG- -5'
13281 3' -52.3 NC_003409.1 + 71596 0.73 0.721905
Target:  5'- aGGUGGGaGCAGA-GU-UCGCCAAGCu- -3'
miRNA:   3'- -CCACCC-CGUUUaCAcAGUGGUUCGcg -5'
13281 3' -52.3 NC_003409.1 + 75189 0.81 0.333658
Target:  5'- aGUGagcauGGCAGAUGUucGUCACCGGGCGCg -3'
miRNA:   3'- cCACc----CCGUUUACA--CAGUGGUUCGCG- -5'
13281 3' -52.3 NC_003409.1 + 77409 0.67 0.950308
Target:  5'- aGGUGGuccaugcauagacuGGCA--UGUGauuacUCGCaCAAGCGCu -3'
miRNA:   3'- -CCACC--------------CCGUuuACAC-----AGUG-GUUCGCG- -5'
13281 3' -52.3 NC_003409.1 + 77420 0.69 0.890083
Target:  5'- -cUGGGGUAgugacuGAUGUGggACCGGGCGa -3'
miRNA:   3'- ccACCCCGU------UUACACagUGGUUCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.