miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13281 3' -52.3 NC_003409.1 + 134670 0.66 0.969657
Target:  5'- uGGUGGaGGC--GUGuUGUCGcCCAAGauacuaGCa -3'
miRNA:   3'- -CCACC-CCGuuUAC-ACAGU-GGUUCg-----CG- -5'
13281 3' -52.3 NC_003409.1 + 133861 0.71 0.844122
Target:  5'- aGGUGGGugugguucuaGCAGGgucUGUGUgauuuuggaCACCAGGUGCc -3'
miRNA:   3'- -CCACCC----------CGUUU---ACACA---------GUGGUUCGCG- -5'
13281 3' -52.3 NC_003409.1 + 133477 0.66 0.979944
Target:  5'- cGGUGaGGGCccccUGUGUCugUccgccuggaaacaGGGUGCu -3'
miRNA:   3'- -CCAC-CCCGuuu-ACACAGugG-------------UUCGCG- -5'
13281 3' -52.3 NC_003409.1 + 131372 0.69 0.909879
Target:  5'- aGUGGGuGCAGGggagGcGUCACCAGGUu- -3'
miRNA:   3'- cCACCC-CGUUUa---CaCAGUGGUUCGcg -5'
13281 3' -52.3 NC_003409.1 + 131268 0.67 0.966828
Target:  5'- aGGUGGGGCAcgaaaa----CAGGCGCa -3'
miRNA:   3'- -CCACCCCGUuuacacagugGUUCGCG- -5'
13281 3' -52.3 NC_003409.1 + 126868 0.69 0.909879
Target:  5'- cGGUGGaGGUAAagGUGUUGCgGgAGCGg -3'
miRNA:   3'- -CCACC-CCGUUuaCACAGUGgU-UCGCg -5'
13281 3' -52.3 NC_003409.1 + 123902 0.67 0.963123
Target:  5'- gGGUGGGGCAAGcagGaCACgGGGCcuGCc -3'
miRNA:   3'- -CCACCCCGUUUacaCaGUGgUUCG--CG- -5'
13281 3' -52.3 NC_003409.1 + 119431 0.66 0.972593
Target:  5'- cGGcUGGGGCGuccaauggAAUGgcgcgGUCGCCuAGCu- -3'
miRNA:   3'- -CC-ACCCCGU--------UUACa----CAGUGGuUCGcg -5'
13281 3' -52.3 NC_003409.1 + 118104 0.66 0.972309
Target:  5'- cGGUGuuuguGGCAguucaugucccgGAUGUGUUACUAaauggguGGCGCu -3'
miRNA:   3'- -CCACc----CCGU------------UUACACAGUGGU-------UCGCG- -5'
13281 3' -52.3 NC_003409.1 + 116842 0.66 0.977598
Target:  5'- cGGUGGGauuuucuGUGGAUGgg-CACaGAGCGCa -3'
miRNA:   3'- -CCACCC-------CGUUUACacaGUGgUUCGCG- -5'
13281 3' -52.3 NC_003409.1 + 115682 0.66 0.977598
Target:  5'- uGUGGGGCGAcuugcgccgcagaAUGUGgC-CCGGGCu- -3'
miRNA:   3'- cCACCCCGUU-------------UACACaGuGGUUCGcg -5'
13281 3' -52.3 NC_003409.1 + 115590 0.66 0.974523
Target:  5'- gGGUGGGGCcGGUGgccuccuccuugucUGUC-CUggGCa- -3'
miRNA:   3'- -CCACCCCGuUUAC--------------ACAGuGGuuCGcg -5'
13281 3' -52.3 NC_003409.1 + 114405 0.67 0.965845
Target:  5'- gGGUGGGGCuggcaagGcCcCCAaAGCGCg -3'
miRNA:   3'- -CCACCCCGuuuaca-CaGuGGU-UCGCG- -5'
13281 3' -52.3 NC_003409.1 + 113396 0.67 0.963123
Target:  5'- uGUuuGGCGAcgGUGUCugaGCCAGcGCGCa -3'
miRNA:   3'- cCAccCCGUUuaCACAG---UGGUU-CGCG- -5'
13281 3' -52.3 NC_003409.1 + 111322 0.66 0.980168
Target:  5'- cGGgGGGGCu--UGUGUC-UCucGCGUg -3'
miRNA:   3'- -CCaCCCCGuuuACACAGuGGuuCGCG- -5'
13281 3' -52.3 NC_003409.1 + 110033 0.69 0.903528
Target:  5'- --aGGGGUAcg-GUGgcaguguugCGCCGGGCGCc -3'
miRNA:   3'- ccaCCCCGUuuaCACa--------GUGGUUCGCG- -5'
13281 3' -52.3 NC_003409.1 + 104818 0.67 0.959514
Target:  5'- gGGUGGagucccugcGCAAugGUGccUCACUAGGCGCg -3'
miRNA:   3'- -CCACCc--------CGUUuaCAC--AGUGGUUCGCG- -5'
13281 3' -52.3 NC_003409.1 + 100068 0.7 0.857958
Target:  5'- uGGcGGGGCGGcUGUGgCACCAaauuauggaggcuaGGUGCc -3'
miRNA:   3'- -CCaCCCCGUUuACACaGUGGU--------------UCGCG- -5'
13281 3' -52.3 NC_003409.1 + 90952 0.72 0.800147
Target:  5'- gGGUGGGGCAAAUGguuugGcCACCcuAGUcCg -3'
miRNA:   3'- -CCACCCCGUUUACa----CaGUGGu-UCGcG- -5'
13281 3' -52.3 NC_003409.1 + 87542 0.67 0.951581
Target:  5'- uGG-GGGaGCAAucccUGUGgCGCCAgaGGUGCa -3'
miRNA:   3'- -CCaCCC-CGUUu---ACACaGUGGU--UCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.