miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13281 3' -52.3 NC_003409.1 + 87162 0.67 0.955668
Target:  5'- -cUGGGGUggGUG-GUgCGCCGgcggagGGCGUg -3'
miRNA:   3'- ccACCCCGuuUACaCA-GUGGU------UCGCG- -5'
13281 3' -52.3 NC_003409.1 + 85330 0.66 0.969657
Target:  5'- cGGUGGcuccccGGCAuagcUGUGcUUACCAcuggacauugcGGCGCg -3'
miRNA:   3'- -CCACC------CCGUuu--ACAC-AGUGGU-----------UCGCG- -5'
13281 3' -52.3 NC_003409.1 + 84580 0.68 0.94725
Target:  5'- --cGGGGCA---GUGcUUGCCAGGCGa -3'
miRNA:   3'- ccaCCCCGUuuaCAC-AGUGGUUCGCg -5'
13281 3' -52.3 NC_003409.1 + 82863 0.67 0.965513
Target:  5'- uGGUGGGGCGggAAUGaagacauugaaacaUG-CGCCAugguGGCGg -3'
miRNA:   3'- -CCACCCCGU--UUAC--------------ACaGUGGU----UCGCg -5'
13281 3' -52.3 NC_003409.1 + 82506 0.67 0.966502
Target:  5'- --cGGGGCGGAcaGUGUCGCgcugcaccgaagCGAGCGa -3'
miRNA:   3'- ccaCCCCGUUUa-CACAGUG------------GUUCGCg -5'
13281 3' -52.3 NC_003409.1 + 82254 0.74 0.690932
Target:  5'- gGGUGGGG-GGAUG-GUcCGCCGGGCGa -3'
miRNA:   3'- -CCACCCCgUUUACaCA-GUGGUUCGCg -5'
13281 3' -52.3 NC_003409.1 + 77420 0.69 0.890083
Target:  5'- -cUGGGGUAgugacuGAUGUGggACCGGGCGa -3'
miRNA:   3'- ccACCCCGU------UUACACagUGGUUCGCg -5'
13281 3' -52.3 NC_003409.1 + 77409 0.67 0.950308
Target:  5'- aGGUGGuccaugcauagacuGGCA--UGUGauuacUCGCaCAAGCGCu -3'
miRNA:   3'- -CCACC--------------CCGUuuACAC-----AGUG-GUUCGCG- -5'
13281 3' -52.3 NC_003409.1 + 75189 0.81 0.333658
Target:  5'- aGUGagcauGGCAGAUGUucGUCACCGGGCGCg -3'
miRNA:   3'- cCACc----CCGUUUACA--CAGUGGUUCGCG- -5'
13281 3' -52.3 NC_003409.1 + 71596 0.73 0.721905
Target:  5'- aGGUGGGaGCAGA-GU-UCGCCAAGCu- -3'
miRNA:   3'- -CCACCC-CGUUUaCAcAGUGGUUCGcg -5'
13281 3' -52.3 NC_003409.1 + 71558 0.69 0.909879
Target:  5'- gGGcGGGGCuuAAUGaGUCGCCGGuaGCu -3'
miRNA:   3'- -CCaCCCCGu-UUACaCAGUGGUUcgCG- -5'
13281 3' -52.3 NC_003409.1 + 69845 0.7 0.849893
Target:  5'- -aUGGGGCAAAuccggguucacccuUGUGUUGCCugguucGGUGCu -3'
miRNA:   3'- ccACCCCGUUU--------------ACACAGUGGu-----UCGCG- -5'
13281 3' -52.3 NC_003409.1 + 59908 0.66 0.977841
Target:  5'- gGGUcGGGGUGAG-GUGcuUCGCUGAguuGCGCa -3'
miRNA:   3'- -CCA-CCCCGUUUaCAC--AGUGGUU---CGCG- -5'
13281 3' -52.3 NC_003409.1 + 53203 0.66 0.975319
Target:  5'- uGGcucgGGGGCGGAUcgGUGUgGCUgcuguucuuGGGCGUg -3'
miRNA:   3'- -CCa---CCCCGUUUA--CACAgUGG---------UUCGCG- -5'
13281 3' -52.3 NC_003409.1 + 46175 0.69 0.896928
Target:  5'- uGGgccGGGGCGaugacuGAUGaGUaGCCAAGUGCg -3'
miRNA:   3'- -CCa--CCCCGU------UUACaCAgUGGUUCGCG- -5'
13281 3' -52.3 NC_003409.1 + 45933 0.7 0.852335
Target:  5'- --gGGGGCAGAUaguuuuugGUGcaugcUCACCAuGGCGCu -3'
miRNA:   3'- ccaCCCCGUUUA--------CAC-----AGUGGU-UCGCG- -5'
13281 3' -52.3 NC_003409.1 + 36132 0.66 0.977841
Target:  5'- gGGUGuGGGCAAAUcaacgcugGUCaacGCCGuGUGCg -3'
miRNA:   3'- -CCAC-CCCGUUUAca------CAG---UGGUuCGCG- -5'
13281 3' -52.3 NC_003409.1 + 33269 0.66 0.972593
Target:  5'- gGGUGGGGaUggGUGUGaaAgCAGGaCGUc -3'
miRNA:   3'- -CCACCCC-GuuUACACagUgGUUC-GCG- -5'
13281 3' -52.3 NC_003409.1 + 30105 1.14 0.002746
Target:  5'- cGGUGGGGCAAAUGUGUCACCAAGCGCc -3'
miRNA:   3'- -CCACCCCGUUUACACAGUGGUUCGCG- -5'
13281 3' -52.3 NC_003409.1 + 23579 0.66 0.972593
Target:  5'- cGGcUGGGGCGuccaauggAAUGgcgcgGUCGCCuAGCu- -3'
miRNA:   3'- -CC-ACCCCGU--------UUACa----CAGUGGuUCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.