miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13281 3' -52.3 NC_003409.1 + 10085 0.72 0.800147
Target:  5'- cGUGGGGUucccgcUGUCGCCcuGAGCGUg -3'
miRNA:   3'- cCACCCCGuuuac-ACAGUGG--UUCGCG- -5'
13281 3' -52.3 NC_003409.1 + 84580 0.68 0.94725
Target:  5'- --cGGGGCA---GUGcUUGCCAGGCGa -3'
miRNA:   3'- ccaCCCCGUuuaCAC-AGUGGUUCGCg -5'
13281 3' -52.3 NC_003409.1 + 22421 0.68 0.94267
Target:  5'- --cGGGGCGGAaaguaUGcggGUCGCCugcgaagcGGCGCa -3'
miRNA:   3'- ccaCCCCGUUU-----ACa--CAGUGGu-------UCGCG- -5'
13281 3' -52.3 NC_003409.1 + 71558 0.69 0.909879
Target:  5'- gGGcGGGGCuuAAUGaGUCGCCGGuaGCu -3'
miRNA:   3'- -CCaCCCCGu-UUACaCAGUGGUUcgCG- -5'
13281 3' -52.3 NC_003409.1 + 110033 0.69 0.903528
Target:  5'- --aGGGGUAcg-GUGgcaguguugCGCCGGGCGCc -3'
miRNA:   3'- ccaCCCCGUuuaCACa--------GUGGUUCGCG- -5'
13281 3' -52.3 NC_003409.1 + 46175 0.69 0.896928
Target:  5'- uGGgccGGGGCGaugacuGAUGaGUaGCCAAGUGCg -3'
miRNA:   3'- -CCa--CCCCGU------UUACaCAgUGGUUCGCG- -5'
13281 3' -52.3 NC_003409.1 + 8943 0.69 0.890778
Target:  5'- gGGUGuGGGgGAAcuggacgucugaaagGUGUCACCccucGAGUGCg -3'
miRNA:   3'- -CCAC-CCCgUUUa--------------CACAGUGG----UUCGCG- -5'
13281 3' -52.3 NC_003409.1 + 100068 0.7 0.857958
Target:  5'- uGGcGGGGCGGcUGUGgCACCAaauuauggaggcuaGGUGCc -3'
miRNA:   3'- -CCaCCCCGUUuACACaGUGGU--------------UCGCG- -5'
13281 3' -52.3 NC_003409.1 + 45933 0.7 0.852335
Target:  5'- --gGGGGCAGAUaguuuuugGUGcaugcUCACCAuGGCGCu -3'
miRNA:   3'- ccaCCCCGUUUA--------CAC-----AGUGGU-UCGCG- -5'
13281 3' -52.3 NC_003409.1 + 77409 0.67 0.950308
Target:  5'- aGGUGGuccaugcauagacuGGCA--UGUGauuacUCGCaCAAGCGCu -3'
miRNA:   3'- -CCACC--------------CCGUuuACAC-----AGUG-GUUCGCG- -5'
13281 3' -52.3 NC_003409.1 + 104818 0.67 0.959514
Target:  5'- gGGUGGagucccugcGCAAugGUGccUCACUAGGCGCg -3'
miRNA:   3'- -CCACCc--------CGUUuaCAC--AGUGGUUCGCG- -5'
13281 3' -52.3 NC_003409.1 + 82863 0.67 0.965513
Target:  5'- uGGUGGGGCGggAAUGaagacauugaaacaUG-CGCCAugguGGCGg -3'
miRNA:   3'- -CCACCCCGU--UUAC--------------ACaGUGGU----UCGCg -5'
13281 3' -52.3 NC_003409.1 + 115682 0.66 0.977598
Target:  5'- uGUGGGGCGAcuugcgccgcagaAUGUGgC-CCGGGCu- -3'
miRNA:   3'- cCACCCCGUU-------------UACACaGuGGUUCGcg -5'
13281 3' -52.3 NC_003409.1 + 116842 0.66 0.977598
Target:  5'- cGGUGGGauuuucuGUGGAUGgg-CACaGAGCGCa -3'
miRNA:   3'- -CCACCC-------CGUUUACacaGUGgUUCGCG- -5'
13281 3' -52.3 NC_003409.1 + 11675 0.66 0.977105
Target:  5'- aGGUGGGuGgAAAUGUgGUguccacggcaaccaCGCCGGGuCGCc -3'
miRNA:   3'- -CCACCC-CgUUUACA-CA--------------GUGGUUC-GCG- -5'
13281 3' -52.3 NC_003409.1 + 115590 0.66 0.974523
Target:  5'- gGGUGGGGCcGGUGgccuccuccuugucUGUC-CUggGCa- -3'
miRNA:   3'- -CCACCCCGuUUAC--------------ACAGuGGuuCGcg -5'
13281 3' -52.3 NC_003409.1 + 23579 0.66 0.972593
Target:  5'- cGGcUGGGGCGuccaauggAAUGgcgcgGUCGCCuAGCu- -3'
miRNA:   3'- -CC-ACCCCGU--------UUACa----CAGUGGuUCGcg -5'
13281 3' -52.3 NC_003409.1 + 13330 0.66 0.972593
Target:  5'- uGUGGGuGCAGGUGgagcgaaUCGCCGGGUa- -3'
miRNA:   3'- cCACCC-CGUUUACac-----AGUGGUUCGcg -5'
13281 3' -52.3 NC_003409.1 + 118104 0.66 0.972309
Target:  5'- cGGUGuuuguGGCAguucaugucccgGAUGUGUUACUAaauggguGGCGCu -3'
miRNA:   3'- -CCACc----CCGU------------UUACACAGUGGU-------UCGCG- -5'
13281 3' -52.3 NC_003409.1 + 85330 0.66 0.969657
Target:  5'- cGGUGGcuccccGGCAuagcUGUGcUUACCAcuggacauugcGGCGCg -3'
miRNA:   3'- -CCACC------CCGUuu--ACAC-AGUGGU-----------UCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.