miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13289 3' -56 NC_003409.1 + 109172 0.68 0.788857
Target:  5'- cGGGGguUCguGGCCGCCgGCUgGGACg -3'
miRNA:   3'- -UCCCguGGguUUGGCGG-CGAaCUUGg -5'
13289 3' -56 NC_003409.1 + 133934 0.67 0.849291
Target:  5'- gAGGGUcCCCAGcCCGUgGCUa-GGCCa -3'
miRNA:   3'- -UCCCGuGGGUUuGGCGgCGAacUUGG- -5'
13289 3' -56 NC_003409.1 + 118553 0.67 0.846077
Target:  5'- cGGcGCACCCAGGaacCCGgCGCggcgcaccccagGAACCc -3'
miRNA:   3'- uCC-CGUGGGUUU---GGCgGCGaa----------CUUGG- -5'
13289 3' -56 NC_003409.1 + 108369 0.67 0.841197
Target:  5'- cGGGCGCCCcgAGAUCGCacugggugccUGCUguaaGAGCUg -3'
miRNA:   3'- uCCCGUGGG--UUUGGCG----------GCGAa---CUUGG- -5'
13289 3' -56 NC_003409.1 + 15989 0.67 0.832071
Target:  5'- cGGGCucgccgcGCCCGAGCUGUCGUUUacuACUg -3'
miRNA:   3'- uCCCG-------UGGGUUUGGCGGCGAAcu-UGG- -5'
13289 3' -56 NC_003409.1 + 119034 0.67 0.824438
Target:  5'- aGGGGC-CCCGcccACCGCCaCUccAGCCg -3'
miRNA:   3'- -UCCCGuGGGUu--UGGCGGcGAacUUGG- -5'
13289 3' -56 NC_003409.1 + 55440 0.68 0.815788
Target:  5'- cGGGCGgC-AAGCCGCCGCccaUGucCCg -3'
miRNA:   3'- uCCCGUgGgUUUGGCGGCGa--ACuuGG- -5'
13289 3' -56 NC_003409.1 + 88086 0.67 0.824438
Target:  5'- cGGGCacggcgccGCCCAAGCCGCaGCacGAaacacggcuuGCCg -3'
miRNA:   3'- uCCCG--------UGGGUUUGGCGgCGaaCU----------UGG- -5'
13289 3' -56 NC_003409.1 + 96425 0.68 0.797989
Target:  5'- cGGGgGCCC-AACCGCaguuCGUcaGGACCa -3'
miRNA:   3'- uCCCgUGGGuUUGGCG----GCGaaCUUGG- -5'
13289 3' -56 NC_003409.1 + 87599 0.67 0.849291
Target:  5'- cGGGCuCCuCAGGgUGCUGCgagUGAGCg -3'
miRNA:   3'- uCCCGuGG-GUUUgGCGGCGa--ACUUGg -5'
13289 3' -56 NC_003409.1 + 128200 0.67 0.857185
Target:  5'- cGGGCACCCccAACCG-CGCcaagGAgggcuaGCCa -3'
miRNA:   3'- uCCCGUGGGu-UUGGCgGCGaa--CU------UGG- -5'
13289 3' -56 NC_003409.1 + 103802 0.66 0.864872
Target:  5'- cAGGaCACCCGAcccGCCaGCCGCccccuGCCg -3'
miRNA:   3'- -UCCcGUGGGUU---UGG-CGGCGaacu-UGG- -5'
13289 3' -56 NC_003409.1 + 92097 0.66 0.893439
Target:  5'- uGGGcCGCC--GGCCGUCGCcUGAAUa -3'
miRNA:   3'- uCCC-GUGGguUUGGCGGCGaACUUGg -5'
13289 3' -56 NC_003409.1 + 86939 0.66 0.892769
Target:  5'- gGGGGUuauggaCCAGaacaaucuuuaguGCCGCCGCcuUUGggUCu -3'
miRNA:   3'- -UCCCGug----GGUU-------------UGGCGGCG--AACuuGG- -5'
13289 3' -56 NC_003409.1 + 67969 0.66 0.886635
Target:  5'- cGuGGCGCCCccuGCgCGCCGCacccACCg -3'
miRNA:   3'- uC-CCGUGGGuu-UG-GCGGCGaacuUGG- -5'
13289 3' -56 NC_003409.1 + 19452 0.66 0.886635
Target:  5'- gGGGGCcgcugGCCUu-GCCGCUGCgacgUGggUUu -3'
miRNA:   3'- -UCCCG-----UGGGuuUGGCGGCGa---ACuuGG- -5'
13289 3' -56 NC_003409.1 + 22610 0.66 0.886635
Target:  5'- uGGGGCugCUcuucuGggUgGCCGUgaUUGAGCUa -3'
miRNA:   3'- -UCCCGugGG-----UuuGgCGGCG--AACUUGG- -5'
13289 3' -56 NC_003409.1 + 93941 0.66 0.875276
Target:  5'- uGGGCugCUuuggacggcuauuaaGGACCGCCaaUcGAGCCa -3'
miRNA:   3'- uCCCGugGG---------------UUUGGCGGcgAaCUUGG- -5'
13289 3' -56 NC_003409.1 + 131962 0.66 0.872347
Target:  5'- -aGGCACCCAAuACC-CC-CUcUGAACCc -3'
miRNA:   3'- ucCCGUGGGUU-UGGcGGcGA-ACUUGG- -5'
13289 3' -56 NC_003409.1 + 40965 0.66 0.864872
Target:  5'- uGGcuuGCAUUaggCGAGCCGCCGCccgGGGCCu -3'
miRNA:   3'- uCC---CGUGG---GUUUGGCGGCGaa-CUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.