miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13289 3' -56 NC_003409.1 + 96425 0.68 0.797989
Target:  5'- cGGGgGCCC-AACCGCaguuCGUcaGGACCa -3'
miRNA:   3'- uCCCgUGGGuUUGGCG----GCGaaCUUGG- -5'
13289 3' -56 NC_003409.1 + 97732 0.66 0.872347
Target:  5'- -aGGCACUCGGgguCUGCCGCgcaGGACUc -3'
miRNA:   3'- ucCCGUGGGUUu--GGCGGCGaa-CUUGG- -5'
13289 3' -56 NC_003409.1 + 98164 0.72 0.547786
Target:  5'- cAGGGCucgugCCAGGgCGCCGUUUGuaGACCa -3'
miRNA:   3'- -UCCCGug---GGUUUgGCGGCGAAC--UUGG- -5'
13289 3' -56 NC_003409.1 + 101489 0.72 0.568015
Target:  5'- aGGGGguUCUAAAaaauaCGCCGCgcGAACCa -3'
miRNA:   3'- -UCCCguGGGUUUg----GCGGCGaaCUUGG- -5'
13289 3' -56 NC_003409.1 + 102006 0.66 0.864872
Target:  5'- --uGCACCCAGGcCCGCCuggaauccuuUUUGAGCCg -3'
miRNA:   3'- uccCGUGGGUUU-GGCGGc---------GAACUUGG- -5'
13289 3' -56 NC_003409.1 + 103802 0.66 0.864872
Target:  5'- cAGGaCACCCGAcccGCCaGCCGCccccuGCCg -3'
miRNA:   3'- -UCCcGUGGGUU---UGG-CGGCGaacu-UGG- -5'
13289 3' -56 NC_003409.1 + 105552 0.68 0.788857
Target:  5'- cAGGGUGCCCAgcgauuccuGACUGgCGCUggcauACCu -3'
miRNA:   3'- -UCCCGUGGGU---------UUGGCgGCGAacu--UGG- -5'
13289 3' -56 NC_003409.1 + 107709 0.66 0.864872
Target:  5'- --cGCACCauaGGGCUGCCGCU-GGugCg -3'
miRNA:   3'- uccCGUGGg--UUUGGCGGCGAaCUugG- -5'
13289 3' -56 NC_003409.1 + 108369 0.67 0.841197
Target:  5'- cGGGCGCCCcgAGAUCGCacugggugccUGCUguaaGAGCUg -3'
miRNA:   3'- uCCCGUGGG--UUUGGCG----------GCGAa---CUUGG- -5'
13289 3' -56 NC_003409.1 + 109147 0.7 0.670756
Target:  5'- aGGGGCGUggAGGCUGCCGCUUGuuuCCu -3'
miRNA:   3'- -UCCCGUGggUUUGGCGGCGAACuu-GG- -5'
13289 3' -56 NC_003409.1 + 109172 0.68 0.788857
Target:  5'- cGGGGguUCguGGCCGCCgGCUgGGACg -3'
miRNA:   3'- -UCCCguGGguUUGGCGG-CGAaCUUGg -5'
13289 3' -56 NC_003409.1 + 109333 0.66 0.886635
Target:  5'- cGGGaGCCgGAGCaCGCCGCcccGGACg -3'
miRNA:   3'- uCCCgUGGgUUUG-GCGGCGaa-CUUGg -5'
13289 3' -56 NC_003409.1 + 109679 0.68 0.770172
Target:  5'- cGGGGCGCgCGcGCauaGCCGuCUUGGuguggGCCg -3'
miRNA:   3'- -UCCCGUGgGUuUGg--CGGC-GAACU-----UGG- -5'
13289 3' -56 NC_003409.1 + 110009 0.69 0.71844
Target:  5'- cGGGCGCCaccgccucCCGCCGCggcgucuugggcggcGGACCa -3'
miRNA:   3'- uCCCGUGGguuu----GGCGGCGaa-------------CUUGG- -5'
13289 3' -56 NC_003409.1 + 113357 0.67 0.841197
Target:  5'- uGGGCG-CCAAGCaGCUGCUgc-GCCg -3'
miRNA:   3'- uCCCGUgGGUUUGgCGGCGAacuUGG- -5'
13289 3' -56 NC_003409.1 + 115802 0.73 0.48867
Target:  5'- cAGaGGCACCCAAGgCGCUGCa--GACCc -3'
miRNA:   3'- -UC-CCGUGGGUUUgGCGGCGaacUUGG- -5'
13289 3' -56 NC_003409.1 + 116076 0.7 0.670756
Target:  5'- cAGGGCAUCCGcGGCCGCCGgacagcucCUcGAuGCCa -3'
miRNA:   3'- -UCCCGUGGGU-UUGGCGGC--------GAaCU-UGG- -5'
13289 3' -56 NC_003409.1 + 117727 0.68 0.788857
Target:  5'- gAGGGUGCCCugguugacacAAugUGCCGCgcaucAACCa -3'
miRNA:   3'- -UCCCGUGGG----------UUugGCGGCGaac--UUGG- -5'
13289 3' -56 NC_003409.1 + 118553 0.67 0.846077
Target:  5'- cGGcGCACCCAGGaacCCGgCGCggcgcaccccagGAACCc -3'
miRNA:   3'- uCC-CGUGGGUUU---GGCgGCGaa----------CUUGG- -5'
13289 3' -56 NC_003409.1 + 119034 0.67 0.824438
Target:  5'- aGGGGC-CCCGcccACCGCCaCUccAGCCg -3'
miRNA:   3'- -UCCCGuGGGUu--UGGCGGcGAacUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.