miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13289 3' -56 NC_003409.1 + 42933 0.71 0.598684
Target:  5'- uGGagacCGCCCucGCCGCCGCUUGcgucaauACCg -3'
miRNA:   3'- uCCc---GUGGGuuUGGCGGCGAACu------UGG- -5'
13289 3' -56 NC_003409.1 + 45392 0.66 0.900655
Target:  5'- --cGuCACCCAGGCCGCuCGCgugaucacaaagcgGGACCc -3'
miRNA:   3'- uccC-GUGGGUUUGGCG-GCGaa------------CUUGG- -5'
13289 3' -56 NC_003409.1 + 55440 0.68 0.815788
Target:  5'- cGGGCGgC-AAGCCGCCGCccaUGucCCg -3'
miRNA:   3'- uCCCGUgGgUUUGGCGGCGa--ACuuGG- -5'
13289 3' -56 NC_003409.1 + 56339 0.7 0.71142
Target:  5'- -aGGCGCCaCGAcCCagaCGCUUGGACCa -3'
miRNA:   3'- ucCCGUGG-GUUuGGcg-GCGAACUUGG- -5'
13289 3' -56 NC_003409.1 + 56971 0.67 0.840377
Target:  5'- cAGGGUggugaugACUCAGAuccuguCCGCUGUgUGGACCa -3'
miRNA:   3'- -UCCCG-------UGGGUUU------GGCGGCGaACUUGG- -5'
13289 3' -56 NC_003409.1 + 67969 0.66 0.886635
Target:  5'- cGuGGCGCCCccuGCgCGCCGCacccACCg -3'
miRNA:   3'- uC-CCGUGGGuu-UG-GCGGCGaacuUGG- -5'
13289 3' -56 NC_003409.1 + 69294 0.69 0.760637
Target:  5'- uAGGGUGCCCcuaaAGACCGuCUGUUgcAACCa -3'
miRNA:   3'- -UCCCGUGGG----UUUGGC-GGCGAacUUGG- -5'
13289 3' -56 NC_003409.1 + 72215 0.67 0.857185
Target:  5'- cAGGGaauaAgCCAAauucGCCcuaGCCGCggGAACCa -3'
miRNA:   3'- -UCCCg---UgGGUU----UGG---CGGCGaaCUUGG- -5'
13289 3' -56 NC_003409.1 + 74162 0.71 0.602795
Target:  5'- uGGGUguugucgccucugccGCCguAGCCGCCGCcgUUGAAUCu -3'
miRNA:   3'- uCCCG---------------UGGguUUGGCGGCG--AACUUGG- -5'
13289 3' -56 NC_003409.1 + 76945 0.73 0.527789
Target:  5'- gGGGGCACCgcUAAACCGCCuCcUGGuGCCa -3'
miRNA:   3'- -UCCCGUGG--GUUUGGCGGcGaACU-UGG- -5'
13289 3' -56 NC_003409.1 + 79231 0.67 0.824438
Target:  5'- gGGGGagGCCCAAaucuaucucuuGCCGCCaGCgcucUGGACa -3'
miRNA:   3'- -UCCCg-UGGGUU-----------UGGCGG-CGa---ACUUGg -5'
13289 3' -56 NC_003409.1 + 86866 0.67 0.824438
Target:  5'- cGGGCACacaCAcucCCGCCGCUccAGCUc -3'
miRNA:   3'- uCCCGUGg--GUuu-GGCGGCGAacUUGG- -5'
13289 3' -56 NC_003409.1 + 86939 0.66 0.892769
Target:  5'- gGGGGUuauggaCCAGaacaaucuuuaguGCCGCCGCcuUUGggUCu -3'
miRNA:   3'- -UCCCGug----GGUU-------------UGGCGGCG--AACuuGG- -5'
13289 3' -56 NC_003409.1 + 87567 0.66 0.863352
Target:  5'- gAGGuGCACCCuggcugaacucACCGacaaauguucCCGCUUGGGCg -3'
miRNA:   3'- -UCC-CGUGGGuu---------UGGC----------GGCGAACUUGg -5'
13289 3' -56 NC_003409.1 + 87599 0.67 0.849291
Target:  5'- cGGGCuCCuCAGGgUGCUGCgagUGAGCg -3'
miRNA:   3'- uCCCGuGG-GUUUgGCGGCGa--ACUUGg -5'
13289 3' -56 NC_003409.1 + 88086 0.67 0.824438
Target:  5'- cGGGCacggcgccGCCCAAGCCGCaGCacGAaacacggcuuGCCg -3'
miRNA:   3'- uCCCG--------UGGGUUUGGCGgCGaaCU----------UGG- -5'
13289 3' -56 NC_003409.1 + 88285 0.66 0.864113
Target:  5'- uAGGGUACCUAAAguauuucCCGCCGac---ACCa -3'
miRNA:   3'- -UCCCGUGGGUUU-------GGCGGCgaacuUGG- -5'
13289 3' -56 NC_003409.1 + 92097 0.66 0.893439
Target:  5'- uGGGcCGCC--GGCCGUCGCcUGAAUa -3'
miRNA:   3'- uCCC-GUGGguUUGGCGGCGaACUUGg -5'
13289 3' -56 NC_003409.1 + 93941 0.66 0.875276
Target:  5'- uGGGCugCUuuggacggcuauuaaGGACCGCCaaUcGAGCCa -3'
miRNA:   3'- uCCCGugGG---------------UUUGGCGGcgAaCUUGG- -5'
13289 3' -56 NC_003409.1 + 95057 0.68 0.788857
Target:  5'- uGGcGGCGCCUGAuacACCGCCGUUgcgGuGGCUa -3'
miRNA:   3'- -UC-CCGUGGGUU---UGGCGGCGAa--C-UUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.