miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13289 3' -56 NC_003409.1 + 14971 0.69 0.721438
Target:  5'- cGaGGCACCCcuACCGUCGCgcGAgacGCUg -3'
miRNA:   3'- uC-CCGUGGGuuUGGCGGCGaaCU---UGG- -5'
13289 3' -56 NC_003409.1 + 119805 0.69 0.731378
Target:  5'- cGGGGuCACcuCCAGGuCaCGCCGCUaggugGGACCg -3'
miRNA:   3'- -UCCC-GUG--GGUUU-G-GCGGCGAa----CUUGG- -5'
13289 3' -56 NC_003409.1 + 23204 0.69 0.731378
Target:  5'- cGGGGuCACCUccaggucaCGCCGCUaggugGGACCg -3'
miRNA:   3'- -UCCC-GUGGGuuug----GCGGCGAa----CUUGG- -5'
13289 3' -56 NC_003409.1 + 121715 0.69 0.741231
Target:  5'- cAGGGCua--GAGCUGCCGCggUGAcACCa -3'
miRNA:   3'- -UCCCGugggUUUGGCGGCGa-ACU-UGG- -5'
13289 3' -56 NC_003409.1 + 30515 0.69 0.741231
Target:  5'- cAGGGCucgccCCCAGuucauguuuccAUCGCCGCU--AACCu -3'
miRNA:   3'- -UCCCGu----GGGUU-----------UGGCGGCGAacUUGG- -5'
13289 3' -56 NC_003409.1 + 10035 0.69 0.750987
Target:  5'- uGGGCugCCAGAccaaauagaguCCGCCuGUUguguggaaguacUGGACCg -3'
miRNA:   3'- uCCCGugGGUUU-----------GGCGG-CGA------------ACUUGG- -5'
13289 3' -56 NC_003409.1 + 69294 0.69 0.760637
Target:  5'- uAGGGUGCCCcuaaAGACCGuCUGUUgcAACCa -3'
miRNA:   3'- -UCCCGUGGG----UUUGGC-GGCGAacUUGG- -5'
13289 3' -56 NC_003409.1 + 109679 0.68 0.770172
Target:  5'- cGGGGCGCgCGcGCauaGCCGuCUUGGuguggGCCg -3'
miRNA:   3'- -UCCCGUGgGUuUGg--CGGC-GAACU-----UGG- -5'
13289 3' -56 NC_003409.1 + 109172 0.68 0.788857
Target:  5'- cGGGGguUCguGGCCGCCgGCUgGGACg -3'
miRNA:   3'- -UCCCguGGguUUGGCGG-CGAaCUUGg -5'
13289 3' -56 NC_003409.1 + 95057 0.68 0.788857
Target:  5'- uGGcGGCGCCUGAuacACCGCCGUUgcgGuGGCUa -3'
miRNA:   3'- -UC-CCGUGGGUU---UGGCGGCGAa--C-UUGG- -5'
13289 3' -56 NC_003409.1 + 105552 0.68 0.788857
Target:  5'- cAGGGUGCCCAgcgauuccuGACUGgCGCUggcauACCu -3'
miRNA:   3'- -UCCCGUGGGU---------UUGGCgGCGAacu--UGG- -5'
13289 3' -56 NC_003409.1 + 117727 0.68 0.788857
Target:  5'- gAGGGUGCCCugguugacacAAugUGCCGCgcaucAACCa -3'
miRNA:   3'- -UCCCGUGGG----------UUugGCGGCGaac--UUGG- -5'
13289 3' -56 NC_003409.1 + 96425 0.68 0.797989
Target:  5'- cGGGgGCCC-AACCGCaguuCGUcaGGACCa -3'
miRNA:   3'- uCCCgUGGGuUUGGCG----GCGaaCUUGG- -5'
13289 3' -56 NC_003409.1 + 55440 0.68 0.815788
Target:  5'- cGGGCGgC-AAGCCGCCGCccaUGucCCg -3'
miRNA:   3'- uCCCGUgGgUUUGGCGGCGa--ACuuGG- -5'
13289 3' -56 NC_003409.1 + 79231 0.67 0.824438
Target:  5'- gGGGGagGCCCAAaucuaucucuuGCCGCCaGCgcucUGGACa -3'
miRNA:   3'- -UCCCg-UGGGUU-----------UGGCGG-CGa---ACUUGg -5'
13289 3' -56 NC_003409.1 + 86866 0.67 0.824438
Target:  5'- cGGGCACacaCAcucCCGCCGCUccAGCUc -3'
miRNA:   3'- uCCCGUGg--GUuu-GGCGGCGAacUUGG- -5'
13289 3' -56 NC_003409.1 + 121395 0.67 0.824438
Target:  5'- cGGGCGgU----UCGUCGCUUGGACCu -3'
miRNA:   3'- uCCCGUgGguuuGGCGGCGAACUUGG- -5'
13289 3' -56 NC_003409.1 + 119034 0.67 0.824438
Target:  5'- aGGGGC-CCCGcccACCGCCaCUccAGCCg -3'
miRNA:   3'- -UCCCGuGGGUu--UGGCGGcGAacUUGG- -5'
13289 3' -56 NC_003409.1 + 88086 0.67 0.824438
Target:  5'- cGGGCacggcgccGCCCAAGCCGCaGCacGAaacacggcuuGCCg -3'
miRNA:   3'- uCCCG--------UGGGUUUGGCGgCGaaCU----------UGG- -5'
13289 3' -56 NC_003409.1 + 29939 0.67 0.827849
Target:  5'- uGGGCGCUUGGugacacauuugccccACCGUCGCcugcccgGAACCa -3'
miRNA:   3'- uCCCGUGGGUU---------------UGGCGGCGaa-----CUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.