miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13289 3' -56 NC_003409.1 + 133102 0.7 0.660487
Target:  5'- uAGGGC-CCUuGGCaaGCCGCU-GGACCa -3'
miRNA:   3'- -UCCCGuGGGuUUGg-CGGCGAaCUUGG- -5'
13289 3' -56 NC_003409.1 + 109333 0.66 0.886635
Target:  5'- cGGGaGCCgGAGCaCGCCGCcccGGACg -3'
miRNA:   3'- uCCCgUGGgUUUG-GCGGCGaa-CUUGg -5'
13289 3' -56 NC_003409.1 + 72215 0.67 0.857185
Target:  5'- cAGGGaauaAgCCAAauucGCCcuaGCCGCggGAACCa -3'
miRNA:   3'- -UCCCg---UgGGUU----UGG---CGGCGaaCUUGG- -5'
13289 3' -56 NC_003409.1 + 42933 0.71 0.598684
Target:  5'- uGGagacCGCCCucGCCGCCGCUUGcgucaauACCg -3'
miRNA:   3'- uCCc---GUGGGuuUGGCGGCGAACu------UGG- -5'
13289 3' -56 NC_003409.1 + 107709 0.66 0.864872
Target:  5'- --cGCACCauaGGGCUGCCGCU-GGugCg -3'
miRNA:   3'- uccCGUGGg--UUUGGCGGCGAaCUugG- -5'
13289 3' -56 NC_003409.1 + 27823 0.66 0.893439
Target:  5'- ----gACCCAucaacACCGCUGCUUGAGgCg -3'
miRNA:   3'- ucccgUGGGUu----UGGCGGCGAACUUgG- -5'
13289 3' -56 NC_003409.1 + 25784 0.66 0.879603
Target:  5'- cGGGCcCCCGu-CCGgcucgucuCCGgaUGAACCg -3'
miRNA:   3'- uCCCGuGGGUuuGGC--------GGCgaACUUGG- -5'
13289 3' -56 NC_003409.1 + 27937 0.73 0.48867
Target:  5'- cAGGGguCCCuccaguGCaCGCCGCUaggugGGACCg -3'
miRNA:   3'- -UCCCguGGGuu----UG-GCGGCGAa----CUUGG- -5'
13289 3' -56 NC_003409.1 + 115802 0.73 0.48867
Target:  5'- cAGaGGCACCCAAGgCGCUGCa--GACCc -3'
miRNA:   3'- -UC-CCGUGGGUUUgGCGGCGaacUUGG- -5'
13289 3' -56 NC_003409.1 + 109147 0.7 0.670756
Target:  5'- aGGGGCGUggAGGCUGCCGCUUGuuuCCu -3'
miRNA:   3'- -UCCCGUGggUUUGGCGGCGAACuu-GG- -5'
13289 3' -56 NC_003409.1 + 95057 0.68 0.788857
Target:  5'- uGGcGGCGCCUGAuacACCGCCGUUgcgGuGGCUa -3'
miRNA:   3'- -UC-CCGUGGGUU---UGGCGGCGAa--C-UUGG- -5'
13289 3' -56 NC_003409.1 + 93941 0.66 0.875276
Target:  5'- uGGGCugCUuuggacggcuauuaaGGACCGCCaaUcGAGCCa -3'
miRNA:   3'- uCCCGugGG---------------UUUGGCGGcgAaCUUGG- -5'
13289 3' -56 NC_003409.1 + 34282 0.7 0.691188
Target:  5'- cGGaCACCCAGGCCGC-GCUUu-GCCu -3'
miRNA:   3'- uCCcGUGGGUUUGGCGgCGAAcuUGG- -5'
13289 3' -56 NC_003409.1 + 56339 0.7 0.71142
Target:  5'- -aGGCGCCaCGAcCCagaCGCUUGGACCa -3'
miRNA:   3'- ucCCGUGG-GUUuGGcg-GCGAACUUGG- -5'
13289 3' -56 NC_003409.1 + 110009 0.69 0.71844
Target:  5'- cGGGCGCCaccgccucCCGCCGCggcgucuugggcggcGGACCa -3'
miRNA:   3'- uCCCGUGGguuu----GGCGGCGaa-------------CUUGG- -5'
13289 3' -56 NC_003409.1 + 119805 0.69 0.731378
Target:  5'- cGGGGuCACcuCCAGGuCaCGCCGCUaggugGGACCg -3'
miRNA:   3'- -UCCC-GUG--GGUUU-G-GCGGCGAa----CUUGG- -5'
13289 3' -56 NC_003409.1 + 121715 0.69 0.741231
Target:  5'- cAGGGCua--GAGCUGCCGCggUGAcACCa -3'
miRNA:   3'- -UCCCGugggUUUGGCGGCGa-ACU-UGG- -5'
13289 3' -56 NC_003409.1 + 133934 0.67 0.849291
Target:  5'- gAGGGUcCCCAGcCCGUgGCUa-GGCCa -3'
miRNA:   3'- -UCCCGuGGGUUuGGCGgCGAacUUGG- -5'
13289 3' -56 NC_003409.1 + 118553 0.67 0.846077
Target:  5'- cGGcGCACCCAGGaacCCGgCGCggcgcaccccagGAACCc -3'
miRNA:   3'- uCC-CGUGGGUUU---GGCgGCGaa----------CUUGG- -5'
13289 3' -56 NC_003409.1 + 108369 0.67 0.841197
Target:  5'- cGGGCGCCCcgAGAUCGCacugggugccUGCUguaaGAGCUg -3'
miRNA:   3'- uCCCGUGGG--UUUGGCG----------GCGAa---CUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.