miRNA display CGI


Results 21 - 40 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13289 3' -56 NC_003409.1 + 109172 0.68 0.788857
Target:  5'- cGGGGguUCguGGCCGCCgGCUgGGACg -3'
miRNA:   3'- -UCCCguGGguUUGGCGG-CGAaCUUGg -5'
13289 3' -56 NC_003409.1 + 109147 0.7 0.670756
Target:  5'- aGGGGCGUggAGGCUGCCGCUUGuuuCCu -3'
miRNA:   3'- -UCCCGUGggUUUGGCGGCGAACuu-GG- -5'
13289 3' -56 NC_003409.1 + 108369 0.67 0.841197
Target:  5'- cGGGCGCCCcgAGAUCGCacugggugccUGCUguaaGAGCUg -3'
miRNA:   3'- uCCCGUGGG--UUUGGCG----------GCGAa---CUUGG- -5'
13289 3' -56 NC_003409.1 + 107709 0.66 0.864872
Target:  5'- --cGCACCauaGGGCUGCCGCU-GGugCg -3'
miRNA:   3'- uccCGUGGg--UUUGGCGGCGAaCUugG- -5'
13289 3' -56 NC_003409.1 + 105552 0.68 0.788857
Target:  5'- cAGGGUGCCCAgcgauuccuGACUGgCGCUggcauACCu -3'
miRNA:   3'- -UCCCGUGGGU---------UUGGCgGCGAacu--UGG- -5'
13289 3' -56 NC_003409.1 + 103802 0.66 0.864872
Target:  5'- cAGGaCACCCGAcccGCCaGCCGCccccuGCCg -3'
miRNA:   3'- -UCCcGUGGGUU---UGG-CGGCGaacu-UGG- -5'
13289 3' -56 NC_003409.1 + 102006 0.66 0.864872
Target:  5'- --uGCACCCAGGcCCGCCuggaauccuuUUUGAGCCg -3'
miRNA:   3'- uccCGUGGGUUU-GGCGGc---------GAACUUGG- -5'
13289 3' -56 NC_003409.1 + 101489 0.72 0.568015
Target:  5'- aGGGGguUCUAAAaaauaCGCCGCgcGAACCa -3'
miRNA:   3'- -UCCCguGGGUUUg----GCGGCGaaCUUGG- -5'
13289 3' -56 NC_003409.1 + 98164 0.72 0.547786
Target:  5'- cAGGGCucgugCCAGGgCGCCGUUUGuaGACCa -3'
miRNA:   3'- -UCCCGug---GGUUUgGCGGCGAAC--UUGG- -5'
13289 3' -56 NC_003409.1 + 97732 0.66 0.872347
Target:  5'- -aGGCACUCGGgguCUGCCGCgcaGGACUc -3'
miRNA:   3'- ucCCGUGGGUUu--GGCGGCGaa-CUUGG- -5'
13289 3' -56 NC_003409.1 + 96425 0.68 0.797989
Target:  5'- cGGGgGCCC-AACCGCaguuCGUcaGGACCa -3'
miRNA:   3'- uCCCgUGGGuUUGGCG----GCGaaCUUGG- -5'
13289 3' -56 NC_003409.1 + 95057 0.68 0.788857
Target:  5'- uGGcGGCGCCUGAuacACCGCCGUUgcgGuGGCUa -3'
miRNA:   3'- -UC-CCGUGGGUU---UGGCGGCGAa--C-UUGG- -5'
13289 3' -56 NC_003409.1 + 93941 0.66 0.875276
Target:  5'- uGGGCugCUuuggacggcuauuaaGGACCGCCaaUcGAGCCa -3'
miRNA:   3'- uCCCGugGG---------------UUUGGCGGcgAaCUUGG- -5'
13289 3' -56 NC_003409.1 + 92097 0.66 0.893439
Target:  5'- uGGGcCGCC--GGCCGUCGCcUGAAUa -3'
miRNA:   3'- uCCC-GUGGguUUGGCGGCGaACUUGg -5'
13289 3' -56 NC_003409.1 + 88285 0.66 0.864113
Target:  5'- uAGGGUACCUAAAguauuucCCGCCGac---ACCa -3'
miRNA:   3'- -UCCCGUGGGUUU-------GGCGGCgaacuUGG- -5'
13289 3' -56 NC_003409.1 + 88086 0.67 0.824438
Target:  5'- cGGGCacggcgccGCCCAAGCCGCaGCacGAaacacggcuuGCCg -3'
miRNA:   3'- uCCCG--------UGGGUUUGGCGgCGaaCU----------UGG- -5'
13289 3' -56 NC_003409.1 + 87599 0.67 0.849291
Target:  5'- cGGGCuCCuCAGGgUGCUGCgagUGAGCg -3'
miRNA:   3'- uCCCGuGG-GUUUgGCGGCGa--ACUUGg -5'
13289 3' -56 NC_003409.1 + 87567 0.66 0.863352
Target:  5'- gAGGuGCACCCuggcugaacucACCGacaaauguucCCGCUUGGGCg -3'
miRNA:   3'- -UCC-CGUGGGuu---------UGGC----------GGCGAACUUGg -5'
13289 3' -56 NC_003409.1 + 86939 0.66 0.892769
Target:  5'- gGGGGUuauggaCCAGaacaaucuuuaguGCCGCCGCcuUUGggUCu -3'
miRNA:   3'- -UCCCGug----GGUU-------------UGGCGGCG--AACuuGG- -5'
13289 3' -56 NC_003409.1 + 86866 0.67 0.824438
Target:  5'- cGGGCACacaCAcucCCGCCGCUccAGCUc -3'
miRNA:   3'- uCCCGUGg--GUuu-GGCGGCGAacUUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.