Results 1 - 20 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13289 | 3' | -56 | NC_003409.1 | + | 133934 | 0.67 | 0.849291 |
Target: 5'- gAGGGUcCCCAGcCCGUgGCUa-GGCCa -3' miRNA: 3'- -UCCCGuGGGUUuGGCGgCGAacUUGG- -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 133102 | 0.7 | 0.660487 |
Target: 5'- uAGGGC-CCUuGGCaaGCCGCU-GGACCa -3' miRNA: 3'- -UCCCGuGGGuUUGg-CGGCGAaCUUGG- -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 132946 | 0.76 | 0.372424 |
Target: 5'- -cGGCAUCCGGACCgGCCGCggGAuCCg -3' miRNA: 3'- ucCCGUGGGUUUGG-CGGCGaaCUuGG- -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 131962 | 0.66 | 0.872347 |
Target: 5'- -aGGCACCCAAuACC-CC-CUcUGAACCc -3' miRNA: 3'- ucCCGUGGGUU-UGGcGGcGA-ACUUGG- -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 131698 | 0.7 | 0.660487 |
Target: 5'- cGGGCGgCCAGggacuACCGCUGCgUGGcacACCc -3' miRNA: 3'- uCCCGUgGGUU-----UGGCGGCGaACU---UGG- -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 128234 | 0.72 | 0.588427 |
Target: 5'- gAGGGCAgCaGAGCC-CCGCaUGGGCCc -3' miRNA: 3'- -UCCCGUgGgUUUGGcGGCGaACUUGG- -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 128200 | 0.67 | 0.857185 |
Target: 5'- cGGGCACCCccAACCG-CGCcaagGAgggcuaGCCa -3' miRNA: 3'- uCCCGUGGGu-UUGGCgGCGaa--CU------UGG- -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 121715 | 0.69 | 0.741231 |
Target: 5'- cAGGGCua--GAGCUGCCGCggUGAcACCa -3' miRNA: 3'- -UCCCGugggUUUGGCGGCGa-ACU-UGG- -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 121395 | 0.67 | 0.824438 |
Target: 5'- cGGGCGgU----UCGUCGCUUGGACCu -3' miRNA: 3'- uCCCGUgGguuuGGCGGCGAACUUGG- -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 119957 | 0.71 | 0.629578 |
Target: 5'- -cGGCGCCCAcGCCGgCGCcUGGcacgcgGCCa -3' miRNA: 3'- ucCCGUGGGUuUGGCgGCGaACU------UGG- -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 119805 | 0.69 | 0.731378 |
Target: 5'- cGGGGuCACcuCCAGGuCaCGCCGCUaggugGGACCg -3' miRNA: 3'- -UCCC-GUG--GGUUU-G-GCGGCGAa----CUUGG- -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 119034 | 0.67 | 0.824438 |
Target: 5'- aGGGGC-CCCGcccACCGCCaCUccAGCCg -3' miRNA: 3'- -UCCCGuGGGUu--UGGCGGcGAacUUGG- -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 118553 | 0.67 | 0.846077 |
Target: 5'- cGGcGCACCCAGGaacCCGgCGCggcgcaccccagGAACCc -3' miRNA: 3'- uCC-CGUGGGUUU---GGCgGCGaa----------CUUGG- -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 117727 | 0.68 | 0.788857 |
Target: 5'- gAGGGUGCCCugguugacacAAugUGCCGCgcaucAACCa -3' miRNA: 3'- -UCCCGUGGG----------UUugGCGGCGaac--UUGG- -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 116076 | 0.7 | 0.670756 |
Target: 5'- cAGGGCAUCCGcGGCCGCCGgacagcucCUcGAuGCCa -3' miRNA: 3'- -UCCCGUGGGU-UUGGCGGC--------GAaCU-UGG- -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 115802 | 0.73 | 0.48867 |
Target: 5'- cAGaGGCACCCAAGgCGCUGCa--GACCc -3' miRNA: 3'- -UC-CCGUGGGUUUgGCGGCGaacUUGG- -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 113357 | 0.67 | 0.841197 |
Target: 5'- uGGGCG-CCAAGCaGCUGCUgc-GCCg -3' miRNA: 3'- uCCCGUgGGUUUGgCGGCGAacuUGG- -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 110009 | 0.69 | 0.71844 |
Target: 5'- cGGGCGCCaccgccucCCGCCGCggcgucuugggcggcGGACCa -3' miRNA: 3'- uCCCGUGGguuu----GGCGGCGaa-------------CUUGG- -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 109679 | 0.68 | 0.770172 |
Target: 5'- cGGGGCGCgCGcGCauaGCCGuCUUGGuguggGCCg -3' miRNA: 3'- -UCCCGUGgGUuUGg--CGGC-GAACU-----UGG- -5' |
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13289 | 3' | -56 | NC_003409.1 | + | 109333 | 0.66 | 0.886635 |
Target: 5'- cGGGaGCCgGAGCaCGCCGCcccGGACg -3' miRNA: 3'- uCCCgUGGgUUUG-GCGGCGaa-CUUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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