miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13289 5' -54.6 NC_003409.1 + 85028 0.69 0.845167
Target:  5'- cGGAgCCAGAUguu--CCCGGUGaCCCu -3'
miRNA:   3'- cCCUgGGUUUAaagucGGGCCAC-GGG- -5'
13289 5' -54.6 NC_003409.1 + 87449 0.66 0.946284
Target:  5'- uGGcACCCAccAGUUggUCAcGCCgUGGUGCCg -3'
miRNA:   3'- cCC-UGGGU--UUAA--AGU-CGG-GCCACGGg -5'
13289 5' -54.6 NC_003409.1 + 87693 0.66 0.926165
Target:  5'- aGGGAuugcuccCCCAAAg--CGGCCaauGUGCUCg -3'
miRNA:   3'- -CCCU-------GGGUUUaaaGUCGGgc-CACGGG- -5'
13289 5' -54.6 NC_003409.1 + 93821 0.66 0.946284
Target:  5'- cGGGAUUUcuGg--CAGCCCG-UGCCUa -3'
miRNA:   3'- -CCCUGGGuuUaaaGUCGGGCcACGGG- -5'
13289 5' -54.6 NC_003409.1 + 95824 0.69 0.83529
Target:  5'- uGGaGugCCAAA--UCAGCCCGGggguaaaccaaCCCg -3'
miRNA:   3'- -CC-CugGGUUUaaAGUCGGGCCac---------GGG- -5'
13289 5' -54.6 NC_003409.1 + 97314 0.67 0.915455
Target:  5'- aGGGugCgAGGcaUCAuGCCCGGggugUGCCUu -3'
miRNA:   3'- -CCCugGgUUUaaAGU-CGGGCC----ACGGG- -5'
13289 5' -54.6 NC_003409.1 + 100065 0.69 0.80229
Target:  5'- cGGGGCggcuguggcaCCAAAUUauggaGGCuaGGUGCCCa -3'
miRNA:   3'- -CCCUG----------GGUUUAAag---UCGggCCACGGG- -5'
13289 5' -54.6 NC_003409.1 + 100686 0.68 0.875973
Target:  5'- aGGGAgUUggGUU--GGCCCGGgacgaGCCCc -3'
miRNA:   3'- -CCCUgGGuuUAAagUCGGGCCa----CGGG- -5'
13289 5' -54.6 NC_003409.1 + 103988 0.73 0.592854
Target:  5'- uGGGACaaaaCGGAgUUCGucGUCCGGUGCCUc -3'
miRNA:   3'- -CCCUGg---GUUUaAAGU--CGGGCCACGGG- -5'
13289 5' -54.6 NC_003409.1 + 111513 0.74 0.572366
Target:  5'- cGGGAUCCuGAUUUCgcgGGCUaCGGUGCgCCu -3'
miRNA:   3'- -CCCUGGGuUUAAAG---UCGG-GCCACG-GG- -5'
13289 5' -54.6 NC_003409.1 + 114430 0.66 0.936978
Target:  5'- cGGGGCCCcAGUUUauGCUaagggCGGUGCUa -3'
miRNA:   3'- -CCCUGGGuUUAAAguCGG-----GCCACGGg -5'
13289 5' -54.6 NC_003409.1 + 120153 0.66 0.941285
Target:  5'- uGGaACCCGuguauccauguauGGUUaUCGuGCCCagGGUGCCCa -3'
miRNA:   3'- cCC-UGGGU-------------UUAA-AGU-CGGG--CCACGGG- -5'
13289 5' -54.6 NC_003409.1 + 121348 0.67 0.89677
Target:  5'- -uGACCUAGGUagUC--CCUGGUGCCCu -3'
miRNA:   3'- ccCUGGGUUUAa-AGucGGGCCACGGG- -5'
13289 5' -54.6 NC_003409.1 + 126491 0.67 0.909466
Target:  5'- aGGGAUCCugggguGAUgacaCAGCCauguuGGUGCUCc -3'
miRNA:   3'- -CCCUGGGu-----UUAaa--GUCGGg----CCACGGG- -5'
13289 5' -54.6 NC_003409.1 + 128069 0.67 0.915455
Target:  5'- aGGGGCCCAugcgg-GGCUCuGcUGCCCu -3'
miRNA:   3'- -CCCUGGGUuuaaagUCGGGcC-ACGGG- -5'
13289 5' -54.6 NC_003409.1 + 132638 0.69 0.810328
Target:  5'- uGGGACCCcuggacauaccGGUUUCAGacuaccaCCUGGUGCUg -3'
miRNA:   3'- -CCCUGGGu----------UUAAAGUC-------GGGCCACGGg -5'
13289 5' -54.6 NC_003409.1 + 133443 0.68 0.875973
Target:  5'- cGGGGuCCCAGGgccggUUCGGUggcauacaggCCGGUgaggGCCCc -3'
miRNA:   3'- -CCCU-GGGUUUa----AAGUCG----------GGCCA----CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.