Results 41 - 60 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13291 | 3' | -52.5 | NC_003409.1 | + | 50063 | 0.67 | 0.935927 |
Target: 5'- gAGGCgUCCGGUA-CugGCGu--GGGCg -3' miRNA: 3'- -UCCGaAGGUCGUcGugCGUuuuCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 47132 | 0.67 | 0.936439 |
Target: 5'- uGGCaaucUCCgagcGGCAGUACGCucccuauuuuugacuGAAGGGCg -3' miRNA: 3'- uCCGa---AGG----UCGUCGUGCGu--------------UUUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 10152 | 0.67 | 0.940928 |
Target: 5'- uGGCUgaccgucucuUUCuGCGGCugGCAGAGGuGGUc -3' miRNA: 3'- uCCGA----------AGGuCGUCGugCGUUUUC-UCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 107028 | 0.66 | 0.954386 |
Target: 5'- aGGGCgUCCAG-GGCAucuCGCAGcAGGGUu -3' miRNA: 3'- -UCCGaAGGUCgUCGU---GCGUUuUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 46846 | 0.66 | 0.954386 |
Target: 5'- uAGGCcUCCuGCAGCAUaugGCAA---GGCu -3' miRNA: 3'- -UCCGaAGGuCGUCGUG---CGUUuucUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 101534 | 0.66 | 0.954386 |
Target: 5'- cAGGCgUCCAagAGCGCGCGcugccucaAGGGGGUc -3' miRNA: 3'- -UCCGaAGGUcgUCGUGCGU--------UUUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 107642 | 0.68 | 0.925138 |
Target: 5'- aGGGCaucCCAGuCAGCGggcCGCAGGAcGGCg -3' miRNA: 3'- -UCCGaa-GGUC-GUCGU---GCGUUUUcUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 12501 | 0.68 | 0.925138 |
Target: 5'- cAGGC--CCAGUAGCAUGCG--GGuGUa -3' miRNA: 3'- -UCCGaaGGUCGUCGUGCGUuuUCuCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 69530 | 0.72 | 0.7137 |
Target: 5'- cGGGCUaaaAGCAGCA-GCcGGAGAGCg -3' miRNA: 3'- -UCCGAaggUCGUCGUgCGuUUUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 33028 | 0.72 | 0.75473 |
Target: 5'- gAGGCaguagCCcgccgcaaggAGCAGCcUGCAGGGGAGCa -3' miRNA: 3'- -UCCGaa---GG----------UCGUCGuGCGUUUUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 120852 | 0.71 | 0.774575 |
Target: 5'- cGGGUUuagaaagacuugUCCAGCAGCACcuaauccaucgGCGGucGGGCu -3' miRNA: 3'- -UCCGA------------AGGUCGUCGUG-----------CGUUuuCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 112152 | 0.7 | 0.830432 |
Target: 5'- cAGGCccugcaUCCGGCAcCACGCccGGGGGCc -3' miRNA: 3'- -UCCGa-----AGGUCGUcGUGCGuuUUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 24214 | 0.7 | 0.830432 |
Target: 5'- gGGGCgcgCCAGCGGUggGC---GGGGCc -3' miRNA: 3'- -UCCGaa-GGUCGUCGugCGuuuUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 38804 | 0.7 | 0.839103 |
Target: 5'- uGGCaa-CGGCAGUcCGCGucAGAGCg -3' miRNA: 3'- uCCGaagGUCGUCGuGCGUuuUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 108275 | 0.7 | 0.845892 |
Target: 5'- uGGGCcUCU-GCGGCGCGCAugucgcucucGAGCg -3' miRNA: 3'- -UCCGaAGGuCGUCGUGCGUuuu-------CUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 84056 | 0.7 | 0.847567 |
Target: 5'- uGGCUggggaaaCCgguGGCGGUugGCAAGuuAGAGCc -3' miRNA: 3'- uCCGAa------GG---UCGUCGugCGUUU--UCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 116146 | 0.7 | 0.847567 |
Target: 5'- aGGGCgcaCAGCGGguCGCAGAacaGGuGCu -3' miRNA: 3'- -UCCGaagGUCGUCguGCGUUU---UCuCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 79415 | 0.69 | 0.863844 |
Target: 5'- aAGGCUgUCCAGagcGCugGCGGcAAGAGa -3' miRNA: 3'- -UCCGA-AGGUCgu-CGugCGUU-UUCUCg -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 133268 | 0.68 | 0.900423 |
Target: 5'- -aGCUggUCCAGCGGCuuGCc-AAGGGCc -3' miRNA: 3'- ucCGA--AGGUCGUCGugCGuuUUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 51068 | 0.68 | 0.913301 |
Target: 5'- -cGCUcUCCGGC-GUAUGCAGGAGAacGCa -3' miRNA: 3'- ucCGA-AGGUCGuCGUGCGUUUUCU--CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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