miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13291 3' -52.5 NC_003409.1 + 67804 0.68 0.900423
Target:  5'- cGGUgggu-GCGGCGCGCAGGGG-GCg -3'
miRNA:   3'- uCCGaagguCGUCGUGCGUUUUCuCG- -5'
13291 3' -52.5 NC_003409.1 + 54660 0.67 0.950155
Target:  5'- gAGGUgaCCAGUAgGUACGUc-AAGGGCg -3'
miRNA:   3'- -UCCGaaGGUCGU-CGUGCGuuUUCUCG- -5'
13291 3' -52.5 NC_003409.1 + 24420 0.67 0.935927
Target:  5'- cAGGagccCCGGCAGCAC-CccAGGAGCc -3'
miRNA:   3'- -UCCgaa-GGUCGUCGUGcGuuUUCUCG- -5'
13291 3' -52.5 NC_003409.1 + 78789 0.68 0.911435
Target:  5'- uGGCUuggguaaaguugccUCCGGCuGGCGCGUAAcGGcaGGCg -3'
miRNA:   3'- uCCGA--------------AGGUCG-UCGUGCGUUuUC--UCG- -5'
13291 3' -52.5 NC_003409.1 + 107028 0.66 0.954386
Target:  5'- aGGGCgUCCAG-GGCAucuCGCAGcAGGGUu -3'
miRNA:   3'- -UCCGaAGGUCgUCGU---GCGUUuUCUCG- -5'
13291 3' -52.5 NC_003409.1 + 74067 0.67 0.930664
Target:  5'- gAGGCUUCUGGUugGGCgaGCGCcgGGAGGAacGCg -3'
miRNA:   3'- -UCCGAAGGUCG--UCG--UGCG--UUUUCU--CG- -5'
13291 3' -52.5 NC_003409.1 + 83067 0.66 0.962104
Target:  5'- cAGGCcUCCGGCGGC-UGCGGuuucucGAcGGCa -3'
miRNA:   3'- -UCCGaAGGUCGUCGuGCGUU------UUcUCG- -5'
13291 3' -52.5 NC_003409.1 + 33028 0.72 0.75473
Target:  5'- gAGGCaguagCCcgccgcaaggAGCAGCcUGCAGGGGAGCa -3'
miRNA:   3'- -UCCGaa---GG----------UCGUCGuGCGUUUUCUCG- -5'
13291 3' -52.5 NC_003409.1 + 120852 0.71 0.774575
Target:  5'- cGGGUUuagaaagacuugUCCAGCAGCACcuaauccaucgGCGGucGGGCu -3'
miRNA:   3'- -UCCGA------------AGGUCGUCGUG-----------CGUUuuCUCG- -5'
13291 3' -52.5 NC_003409.1 + 112152 0.7 0.830432
Target:  5'- cAGGCccugcaUCCGGCAcCACGCccGGGGGCc -3'
miRNA:   3'- -UCCGa-----AGGUCGUcGUGCGuuUUCUCG- -5'
13291 3' -52.5 NC_003409.1 + 125152 0.67 0.935927
Target:  5'- cAGGaugagCAGCAGCA-GCAGGAuGAGCa -3'
miRNA:   3'- -UCCgaag-GUCGUCGUgCGUUUU-CUCG- -5'
13291 3' -52.5 NC_003409.1 + 125116 0.67 0.935927
Target:  5'- cAGGaugagCAGCAGCA-GCAGGAuGAGCa -3'
miRNA:   3'- -UCCgaag-GUCGUCGUgCGUUUU-CUCG- -5'
13291 3' -52.5 NC_003409.1 + 109162 0.67 0.935927
Target:  5'- uGGCcgCCGGCuGGgACGCAGGccGGGCg -3'
miRNA:   3'- uCCGaaGGUCG-UCgUGCGUUUu-CUCG- -5'
13291 3' -52.5 NC_003409.1 + 46846 0.66 0.954386
Target:  5'- uAGGCcUCCuGCAGCAUaugGCAA---GGCu -3'
miRNA:   3'- -UCCGaAGGuCGUCGUG---CGUUuucUCG- -5'
13291 3' -52.5 NC_003409.1 + 79415 0.69 0.863844
Target:  5'- aAGGCUgUCCAGagcGCugGCGGcAAGAGa -3'
miRNA:   3'- -UCCGA-AGGUCgu-CGugCGUU-UUCUCg -5'
13291 3' -52.5 NC_003409.1 + 116146 0.7 0.847567
Target:  5'- aGGGCgcaCAGCGGguCGCAGAacaGGuGCu -3'
miRNA:   3'- -UCCGaagGUCGUCguGCGUUU---UCuCG- -5'
13291 3' -52.5 NC_003409.1 + 84056 0.7 0.847567
Target:  5'- uGGCUggggaaaCCgguGGCGGUugGCAAGuuAGAGCc -3'
miRNA:   3'- uCCGAa------GG---UCGUCGugCGUUU--UCUCG- -5'
13291 3' -52.5 NC_003409.1 + 108275 0.7 0.845892
Target:  5'- uGGGCcUCU-GCGGCGCGCAugucgcucucGAGCg -3'
miRNA:   3'- -UCCGaAGGuCGUCGUGCGUuuu-------CUCG- -5'
13291 3' -52.5 NC_003409.1 + 38804 0.7 0.839103
Target:  5'- uGGCaa-CGGCAGUcCGCGucAGAGCg -3'
miRNA:   3'- uCCGaagGUCGUCGuGCGUuuUCUCG- -5'
13291 3' -52.5 NC_003409.1 + 24214 0.7 0.830432
Target:  5'- gGGGCgcgCCAGCGGUggGC---GGGGCc -3'
miRNA:   3'- -UCCGaa-GGUCGUCGugCGuuuUCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.