miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13291 3' -52.5 NC_003409.1 + 18227 0.67 0.949718
Target:  5'- uGGGCUUCUcGCcaacccaAGCGCgGCAuc-GAGCg -3'
miRNA:   3'- -UCCGAAGGuCG-------UCGUG-CGUuuuCUCG- -5'
13291 3' -52.5 NC_003409.1 + 73289 0.67 0.939455
Target:  5'- cGGCUUCCaugguagaccucAGCGauguGCugGCAAAAcccgccguuauucuGAGCg -3'
miRNA:   3'- uCCGAAGG------------UCGU----CGugCGUUUU--------------CUCG- -5'
13291 3' -52.5 NC_003409.1 + 24540 0.67 0.935927
Target:  5'- cAGGagccCCGGCAGCAC-CccAGGAGCc -3'
miRNA:   3'- -UCCgaa-GGUCGUCGUGcGuuUUCUCG- -5'
13291 3' -52.5 NC_003409.1 + 24460 0.67 0.935927
Target:  5'- cAGGagccCCGGCAGCAC-CccAGGAGCc -3'
miRNA:   3'- -UCCgaa-GGUCGUCGUGcGuuUUCUCG- -5'
13291 3' -52.5 NC_003409.1 + 116242 0.73 0.671449
Target:  5'- aGGaGCUgUCCGGCGGC-CGCGGAugcccuGAGCu -3'
miRNA:   3'- -UC-CGA-AGGUCGUCGuGCGUUUu-----CUCG- -5'
13291 3' -52.5 NC_003409.1 + 35445 1.13 0.00244
Target:  5'- cAGGCUUCCAGCAGCACGCAAAAGAGCa -3'
miRNA:   3'- -UCCGAAGGUCGUCGUGCGUUUUCUCG- -5'
13291 3' -52.5 NC_003409.1 + 131110 0.76 0.492427
Target:  5'- uGGGCUUCCAGCuGCugGUGGcccuGGGUg -3'
miRNA:   3'- -UCCGAAGGUCGuCGugCGUUuu--CUCG- -5'
13291 3' -52.5 NC_003409.1 + 109674 0.76 0.492427
Target:  5'- gAGGCUUCCAGCgugagguacGGCACaGCcuu-GAGCa -3'
miRNA:   3'- -UCCGAAGGUCG---------UCGUG-CGuuuuCUCG- -5'
13291 3' -52.5 NC_003409.1 + 27421 0.73 0.649
Target:  5'- cGGgUUCCAGCAGCAcccacCGCccguccaaauucuAAAAGAGUg -3'
miRNA:   3'- uCCgAAGGUCGUCGU-----GCG-------------UUUUCUCG- -5'
13291 3' -52.5 NC_003409.1 + 27182 0.73 0.650071
Target:  5'- uAGGCcaUUCUAGgAGaCGCGCAAAGGGGg -3'
miRNA:   3'- -UCCG--AAGGUCgUC-GUGCGUUUUCUCg -5'
13291 3' -52.5 NC_003409.1 + 117674 0.73 0.671449
Target:  5'- uGGCcUCCAGCAaagcacauuuuGCACGCAAAu-GGCg -3'
miRNA:   3'- uCCGaAGGUCGU-----------CGUGCGUUUucUCG- -5'
13291 3' -52.5 NC_003409.1 + 101707 0.73 0.671449
Target:  5'- cAGGCcgaugaUUCCAgGUGGCACGgGAggGAGAGCg -3'
miRNA:   3'- -UCCG------AAGGU-CGUCGUGCgUU--UUCUCG- -5'
13291 3' -52.5 NC_003409.1 + 133710 0.67 0.930664
Target:  5'- -cGUccaCAGCAGCGUGCAGAGGGGUa -3'
miRNA:   3'- ucCGaagGUCGUCGUGCGUUUUCUCG- -5'
13291 3' -52.5 NC_003409.1 + 120006 0.66 0.968864
Target:  5'- -cGCUUUUgucuguuggaAGCAGCuagGCGCGAcugaGAGAGCa -3'
miRNA:   3'- ucCGAAGG----------UCGUCG---UGCGUU----UUCUCG- -5'
13291 3' -52.5 NC_003409.1 + 83067 0.66 0.962104
Target:  5'- cAGGCcUCCGGCGGC-UGCGGuuucucGAcGGCa -3'
miRNA:   3'- -UCCGaAGGUCGUCGuGCGUU------UUcUCG- -5'
13291 3' -52.5 NC_003409.1 + 43639 0.66 0.958367
Target:  5'- cGGUaUCCucgcacaccgcGGcCAGCAUGUcgGAGAGCa -3'
miRNA:   3'- uCCGaAGG-----------UC-GUCGUGCGuuUUCUCG- -5'
13291 3' -52.5 NC_003409.1 + 101534 0.66 0.954386
Target:  5'- cAGGCgUCCAagAGCGCGCGcugccucaAGGGGGUc -3'
miRNA:   3'- -UCCGaAGGUcgUCGUGCGU--------UUUCUCG- -5'
13291 3' -52.5 NC_003409.1 + 46846 0.66 0.954386
Target:  5'- uAGGCcUCCuGCAGCAUaugGCAA---GGCu -3'
miRNA:   3'- -UCCGaAGGuCGUCGUG---CGUUuucUCG- -5'
13291 3' -52.5 NC_003409.1 + 107028 0.66 0.954386
Target:  5'- aGGGCgUCCAG-GGCAucuCGCAGcAGGGUu -3'
miRNA:   3'- -UCCGaAGGUCgUCGU---GCGUUuUCUCG- -5'
13291 3' -52.5 NC_003409.1 + 107800 0.66 0.953974
Target:  5'- aGGGCggcgCCugaaaaGGCuGCGCGUcgggcagAAAGGAGCg -3'
miRNA:   3'- -UCCGaa--GG------UCGuCGUGCG-------UUUUCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.