miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13291 3' -52.5 NC_003409.1 + 33942 0.71 0.764717
Target:  5'- gAGGCg-CCAGCgaGGCGCGCuccuGGGGGUu -3'
miRNA:   3'- -UCCGaaGGUCG--UCGUGCGuu--UUCUCG- -5'
13291 3' -52.5 NC_003409.1 + 94284 0.67 0.949718
Target:  5'- cAGGCacugUCCacccucuaauacaAGCGGCcuuuggACGCGAGGGAGg -3'
miRNA:   3'- -UCCGa---AGG-------------UCGUCG------UGCGUUUUCUCg -5'
13291 3' -52.5 NC_003409.1 + 54883 0.67 0.950155
Target:  5'- aGGGUUUCgGGCGGCG-GguGAGGAaaucGCa -3'
miRNA:   3'- -UCCGAAGgUCGUCGUgCguUUUCU----CG- -5'
13291 3' -52.5 NC_003409.1 + 60122 0.66 0.968864
Target:  5'- cGGuCUUUUuaacuuucgccaGGCGGCGCugcgGCGGGAGAGCc -3'
miRNA:   3'- uCC-GAAGG------------UCGUCGUG----CGUUUUCUCG- -5'
13291 3' -52.5 NC_003409.1 + 78789 0.68 0.911435
Target:  5'- uGGCUuggguaaaguugccUCCGGCuGGCGCGUAAcGGcaGGCg -3'
miRNA:   3'- uCCGA--------------AGGUCG-UCGUGCGUUuUC--UCG- -5'
13291 3' -52.5 NC_003409.1 + 13631 0.68 0.919351
Target:  5'- uGGGUUUCaacauGGaCAGCGugucagacuuCGCGGAGGAGCu -3'
miRNA:   3'- -UCCGAAGg----UC-GUCGU----------GCGUUUUCUCG- -5'
13291 3' -52.5 NC_003409.1 + 24260 0.67 0.930664
Target:  5'- gAGGagccCCGGCAGCAC-CccAGGAGCc -3'
miRNA:   3'- -UCCgaa-GGUCGUCGUGcGuuUUCUCG- -5'
13291 3' -52.5 NC_003409.1 + 24300 0.67 0.935927
Target:  5'- cAGGagccCCGGCAGCAC-CccAGGAGCc -3'
miRNA:   3'- -UCCgaa-GGUCGUCGUGcGuuUUCUCG- -5'
13291 3' -52.5 NC_003409.1 + 24420 0.67 0.935927
Target:  5'- cAGGagccCCGGCAGCAC-CccAGGAGCc -3'
miRNA:   3'- -UCCgaa-GGUCGUCGUGcGuuUUCUCG- -5'
13291 3' -52.5 NC_003409.1 + 18227 0.67 0.949718
Target:  5'- uGGGCUUCUcGCcaacccaAGCGCgGCAuc-GAGCg -3'
miRNA:   3'- -UCCGAAGGuCG-------UCGUG-CGUuuuCUCG- -5'
13291 3' -52.5 NC_003409.1 + 24500 0.67 0.935927
Target:  5'- cAGGagccCCGGCAGCAC-CccAGGAGCc -3'
miRNA:   3'- -UCCgaa-GGUCGUCGUGcGuuUUCUCG- -5'
13291 3' -52.5 NC_003409.1 + 24380 0.67 0.935927
Target:  5'- cAGGagccCCGGCAGCAC-CccAGGAGCc -3'
miRNA:   3'- -UCCgaa-GGUCGUCGUGcGuuUUCUCG- -5'
13291 3' -52.5 NC_003409.1 + 7848 0.7 0.830432
Target:  5'- gAGGCccguaGGCAGCugGUAGguGGGGGCa -3'
miRNA:   3'- -UCCGaagg-UCGUCGugCGUU--UUCUCG- -5'
13291 3' -52.5 NC_003409.1 + 24540 0.67 0.935927
Target:  5'- cAGGagccCCGGCAGCAC-CccAGGAGCc -3'
miRNA:   3'- -UCCgaa-GGUCGUCGUGcGuuUUCUCG- -5'
13291 3' -52.5 NC_003409.1 + 64069 0.69 0.879205
Target:  5'- gGGGCUgugUUCAGgAGCugGCAAAGuuuuGCg -3'
miRNA:   3'- -UCCGA---AGGUCgUCGugCGUUUUcu--CG- -5'
13291 3' -52.5 NC_003409.1 + 24340 0.67 0.935927
Target:  5'- cAGGagccCCGGCAGCAC-CccAGGAGCc -3'
miRNA:   3'- -UCCgaa-GGUCGUCGUGcGuuUUCUCG- -5'
13291 3' -52.5 NC_003409.1 + 73289 0.67 0.939455
Target:  5'- cGGCUUCCaugguagaccucAGCGauguGCugGCAAAAcccgccguuauucuGAGCg -3'
miRNA:   3'- uCCGAAGG------------UCGU----CGugCGUUUU--------------CUCG- -5'
13291 3' -52.5 NC_003409.1 + 54660 0.67 0.950155
Target:  5'- gAGGUgaCCAGUAgGUACGUc-AAGGGCg -3'
miRNA:   3'- -UCCGaaGGUCGU-CGUGCGuuUUCUCG- -5'
13291 3' -52.5 NC_003409.1 + 67804 0.68 0.900423
Target:  5'- cGGUgggu-GCGGCGCGCAGGGG-GCg -3'
miRNA:   3'- uCCGaagguCGUCGUGCGUUUUCuCG- -5'
13291 3' -52.5 NC_003409.1 + 113181 0.68 0.919351
Target:  5'- gGGGCUUCgaaCAGCAGgucacuaACGgAAagcGAGAGCa -3'
miRNA:   3'- -UCCGAAG---GUCGUCg------UGCgUU---UUCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.