miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13291 3' -52.5 NC_003409.1 + 35445 1.13 0.00244
Target:  5'- cAGGCUUCCAGCAGCACGCAAAAGAGCa -3'
miRNA:   3'- -UCCGAAGGUCGUCGUGCGUUUUCUCG- -5'
13291 3' -52.5 NC_003409.1 + 109674 0.76 0.492427
Target:  5'- gAGGCUUCCAGCgugagguacGGCACaGCcuu-GAGCa -3'
miRNA:   3'- -UCCGAAGGUCG---------UCGUG-CGuuuuCUCG- -5'
13291 3' -52.5 NC_003409.1 + 131110 0.76 0.492427
Target:  5'- uGGGCUUCCAGCuGCugGUGGcccuGGGUg -3'
miRNA:   3'- -UCCGAAGGUCGuCGugCGUUuu--CUCG- -5'
13291 3' -52.5 NC_003409.1 + 27421 0.73 0.649
Target:  5'- cGGgUUCCAGCAGCAcccacCGCccguccaaauucuAAAAGAGUg -3'
miRNA:   3'- uCCgAAGGUCGUCGU-----GCG-------------UUUUCUCG- -5'
13291 3' -52.5 NC_003409.1 + 27182 0.73 0.650071
Target:  5'- uAGGCcaUUCUAGgAGaCGCGCAAAGGGGg -3'
miRNA:   3'- -UCCG--AAGGUCgUC-GUGCGUUUUCUCg -5'
13291 3' -52.5 NC_003409.1 + 116242 0.73 0.671449
Target:  5'- aGGaGCUgUCCGGCGGC-CGCGGAugcccuGAGCu -3'
miRNA:   3'- -UC-CGA-AGGUCGUCGuGCGUUUu-----CUCG- -5'
13291 3' -52.5 NC_003409.1 + 117674 0.73 0.671449
Target:  5'- uGGCcUCCAGCAaagcacauuuuGCACGCAAAu-GGCg -3'
miRNA:   3'- uCCGaAGGUCGU-----------CGUGCGUUUucUCG- -5'
13291 3' -52.5 NC_003409.1 + 101707 0.73 0.671449
Target:  5'- cAGGCcgaugaUUCCAgGUGGCACGgGAggGAGAGCg -3'
miRNA:   3'- -UCCG------AAGGU-CGUCGUGCgUU--UUCUCG- -5'
13291 3' -52.5 NC_003409.1 + 111067 0.72 0.702175
Target:  5'- cGGGCUUCCGugggucaaugaccGCGGCGggcCGCAGcacGAGAGUu -3'
miRNA:   3'- -UCCGAAGGU-------------CGUCGU---GCGUU---UUCUCG- -5'
13291 3' -52.5 NC_003409.1 + 69530 0.72 0.7137
Target:  5'- cGGGCUaaaAGCAGCA-GCcGGAGAGCg -3'
miRNA:   3'- -UCCGAaggUCGUCGUgCGuUUUCUCG- -5'
13291 3' -52.5 NC_003409.1 + 33028 0.72 0.75473
Target:  5'- gAGGCaguagCCcgccgcaaggAGCAGCcUGCAGGGGAGCa -3'
miRNA:   3'- -UCCGaa---GG----------UCGUCGuGCGUUUUCUCG- -5'
13291 3' -52.5 NC_003409.1 + 33942 0.71 0.764717
Target:  5'- gAGGCg-CCAGCgaGGCGCGCuccuGGGGGUu -3'
miRNA:   3'- -UCCGaaGGUCG--UCGUGCGuu--UUCUCG- -5'
13291 3' -52.5 NC_003409.1 + 120852 0.71 0.774575
Target:  5'- cGGGUUuagaaagacuugUCCAGCAGCACcuaauccaucgGCGGucGGGCu -3'
miRNA:   3'- -UCCGA------------AGGUCGUCGUG-----------CGUUuuCUCG- -5'
13291 3' -52.5 NC_003409.1 + 7848 0.7 0.830432
Target:  5'- gAGGCccguaGGCAGCugGUAGguGGGGGCa -3'
miRNA:   3'- -UCCGaagg-UCGUCGugCGUU--UUCUCG- -5'
13291 3' -52.5 NC_003409.1 + 112152 0.7 0.830432
Target:  5'- cAGGCccugcaUCCGGCAcCACGCccGGGGGCc -3'
miRNA:   3'- -UCCGa-----AGGUCGUcGUGCGuuUUCUCG- -5'
13291 3' -52.5 NC_003409.1 + 24214 0.7 0.830432
Target:  5'- gGGGCgcgCCAGCGGUggGC---GGGGCc -3'
miRNA:   3'- -UCCGaa-GGUCGUCGugCGuuuUCUCG- -5'
13291 3' -52.5 NC_003409.1 + 38804 0.7 0.839103
Target:  5'- uGGCaa-CGGCAGUcCGCGucAGAGCg -3'
miRNA:   3'- uCCGaagGUCGUCGuGCGUuuUCUCG- -5'
13291 3' -52.5 NC_003409.1 + 108275 0.7 0.845892
Target:  5'- uGGGCcUCU-GCGGCGCGCAugucgcucucGAGCg -3'
miRNA:   3'- -UCCGaAGGuCGUCGUGCGUuuu-------CUCG- -5'
13291 3' -52.5 NC_003409.1 + 84056 0.7 0.847567
Target:  5'- uGGCUggggaaaCCgguGGCGGUugGCAAGuuAGAGCc -3'
miRNA:   3'- uCCGAa------GG---UCGUCGugCGUUU--UCUCG- -5'
13291 3' -52.5 NC_003409.1 + 116146 0.7 0.847567
Target:  5'- aGGGCgcaCAGCGGguCGCAGAacaGGuGCu -3'
miRNA:   3'- -UCCGaagGUCGUCguGCGUUU---UCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.