Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
13291 | 3' | -52.5 | NC_003409.1 | + | 35445 | 1.13 | 0.00244 |
Target: 5'- cAGGCUUCCAGCAGCACGCAAAAGAGCa -3' miRNA: 3'- -UCCGAAGGUCGUCGUGCGUUUUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 131110 | 0.76 | 0.492427 |
Target: 5'- uGGGCUUCCAGCuGCugGUGGcccuGGGUg -3' miRNA: 3'- -UCCGAAGGUCGuCGugCGUUuu--CUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 109674 | 0.76 | 0.492427 |
Target: 5'- gAGGCUUCCAGCgugagguacGGCACaGCcuu-GAGCa -3' miRNA: 3'- -UCCGAAGGUCG---------UCGUG-CGuuuuCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 27421 | 0.73 | 0.649 |
Target: 5'- cGGgUUCCAGCAGCAcccacCGCccguccaaauucuAAAAGAGUg -3' miRNA: 3'- uCCgAAGGUCGUCGU-----GCG-------------UUUUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 27182 | 0.73 | 0.650071 |
Target: 5'- uAGGCcaUUCUAGgAGaCGCGCAAAGGGGg -3' miRNA: 3'- -UCCG--AAGGUCgUC-GUGCGUUUUCUCg -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 116242 | 0.73 | 0.671449 |
Target: 5'- aGGaGCUgUCCGGCGGC-CGCGGAugcccuGAGCu -3' miRNA: 3'- -UC-CGA-AGGUCGUCGuGCGUUUu-----CUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 101707 | 0.73 | 0.671449 |
Target: 5'- cAGGCcgaugaUUCCAgGUGGCACGgGAggGAGAGCg -3' miRNA: 3'- -UCCG------AAGGU-CGUCGUGCgUU--UUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 117674 | 0.73 | 0.671449 |
Target: 5'- uGGCcUCCAGCAaagcacauuuuGCACGCAAAu-GGCg -3' miRNA: 3'- uCCGaAGGUCGU-----------CGUGCGUUUucUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 111067 | 0.72 | 0.702175 |
Target: 5'- cGGGCUUCCGugggucaaugaccGCGGCGggcCGCAGcacGAGAGUu -3' miRNA: 3'- -UCCGAAGGU-------------CGUCGU---GCGUU---UUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 69530 | 0.72 | 0.7137 |
Target: 5'- cGGGCUaaaAGCAGCA-GCcGGAGAGCg -3' miRNA: 3'- -UCCGAaggUCGUCGUgCGuUUUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 33028 | 0.72 | 0.75473 |
Target: 5'- gAGGCaguagCCcgccgcaaggAGCAGCcUGCAGGGGAGCa -3' miRNA: 3'- -UCCGaa---GG----------UCGUCGuGCGUUUUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 33942 | 0.71 | 0.764717 |
Target: 5'- gAGGCg-CCAGCgaGGCGCGCuccuGGGGGUu -3' miRNA: 3'- -UCCGaaGGUCG--UCGUGCGuu--UUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 120852 | 0.71 | 0.774575 |
Target: 5'- cGGGUUuagaaagacuugUCCAGCAGCACcuaauccaucgGCGGucGGGCu -3' miRNA: 3'- -UCCGA------------AGGUCGUCGUG-----------CGUUuuCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 7848 | 0.7 | 0.830432 |
Target: 5'- gAGGCccguaGGCAGCugGUAGguGGGGGCa -3' miRNA: 3'- -UCCGaagg-UCGUCGugCGUU--UUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 112152 | 0.7 | 0.830432 |
Target: 5'- cAGGCccugcaUCCGGCAcCACGCccGGGGGCc -3' miRNA: 3'- -UCCGa-----AGGUCGUcGUGCGuuUUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 24214 | 0.7 | 0.830432 |
Target: 5'- gGGGCgcgCCAGCGGUggGC---GGGGCc -3' miRNA: 3'- -UCCGaa-GGUCGUCGugCGuuuUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 38804 | 0.7 | 0.839103 |
Target: 5'- uGGCaa-CGGCAGUcCGCGucAGAGCg -3' miRNA: 3'- uCCGaagGUCGUCGuGCGUuuUCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 108275 | 0.7 | 0.845892 |
Target: 5'- uGGGCcUCU-GCGGCGCGCAugucgcucucGAGCg -3' miRNA: 3'- -UCCGaAGGuCGUCGUGCGUuuu-------CUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 84056 | 0.7 | 0.847567 |
Target: 5'- uGGCUggggaaaCCgguGGCGGUugGCAAGuuAGAGCc -3' miRNA: 3'- uCCGAa------GG---UCGUCGugCGUUU--UCUCG- -5' |
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13291 | 3' | -52.5 | NC_003409.1 | + | 116146 | 0.7 | 0.847567 |
Target: 5'- aGGGCgcaCAGCGGguCGCAGAacaGGuGCu -3' miRNA: 3'- -UCCGaagGUCGUCguGCGUUU---UCuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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