miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13291 3' -52.5 NC_003409.1 + 43639 0.66 0.958367
Target:  5'- cGGUaUCCucgcacaccgcGGcCAGCAUGUcgGAGAGCa -3'
miRNA:   3'- uCCGaAGG-----------UC-GUCGUGCGuuUUCUCG- -5'
13291 3' -52.5 NC_003409.1 + 46846 0.66 0.954386
Target:  5'- uAGGCcUCCuGCAGCAUaugGCAA---GGCu -3'
miRNA:   3'- -UCCGaAGGuCGUCGUG---CGUUuucUCG- -5'
13291 3' -52.5 NC_003409.1 + 47132 0.67 0.936439
Target:  5'- uGGCaaucUCCgagcGGCAGUACGCucccuauuuuugacuGAAGGGCg -3'
miRNA:   3'- uCCGa---AGG----UCGUCGUGCGu--------------UUUCUCG- -5'
13291 3' -52.5 NC_003409.1 + 50063 0.67 0.935927
Target:  5'- gAGGCgUCCGGUA-CugGCGu--GGGCg -3'
miRNA:   3'- -UCCGaAGGUCGUcGugCGUuuuCUCG- -5'
13291 3' -52.5 NC_003409.1 + 51068 0.68 0.913301
Target:  5'- -cGCUcUCCGGC-GUAUGCAGGAGAacGCa -3'
miRNA:   3'- ucCGA-AGGUCGuCGUGCGUUUUCU--CG- -5'
13291 3' -52.5 NC_003409.1 + 54660 0.67 0.950155
Target:  5'- gAGGUgaCCAGUAgGUACGUc-AAGGGCg -3'
miRNA:   3'- -UCCGaaGGUCGU-CGUGCGuuUUCUCG- -5'
13291 3' -52.5 NC_003409.1 + 54883 0.67 0.950155
Target:  5'- aGGGUUUCgGGCGGCG-GguGAGGAaaucGCa -3'
miRNA:   3'- -UCCGAAGgUCGUCGUgCguUUUCU----CG- -5'
13291 3' -52.5 NC_003409.1 + 60122 0.66 0.968864
Target:  5'- cGGuCUUUUuaacuuucgccaGGCGGCGCugcgGCGGGAGAGCc -3'
miRNA:   3'- uCC-GAAGG------------UCGUCGUG----CGUUUUCUCG- -5'
13291 3' -52.5 NC_003409.1 + 64069 0.69 0.879205
Target:  5'- gGGGCUgugUUCAGgAGCugGCAAAGuuuuGCg -3'
miRNA:   3'- -UCCGA---AGGUCgUCGugCGUUUUcu--CG- -5'
13291 3' -52.5 NC_003409.1 + 67804 0.68 0.900423
Target:  5'- cGGUgggu-GCGGCGCGCAGGGG-GCg -3'
miRNA:   3'- uCCGaagguCGUCGUGCGUUUUCuCG- -5'
13291 3' -52.5 NC_003409.1 + 69530 0.72 0.7137
Target:  5'- cGGGCUaaaAGCAGCA-GCcGGAGAGCg -3'
miRNA:   3'- -UCCGAaggUCGUCGUgCGuUUUCUCG- -5'
13291 3' -52.5 NC_003409.1 + 73289 0.67 0.939455
Target:  5'- cGGCUUCCaugguagaccucAGCGauguGCugGCAAAAcccgccguuauucuGAGCg -3'
miRNA:   3'- uCCGAAGG------------UCGU----CGugCGUUUU--------------CUCG- -5'
13291 3' -52.5 NC_003409.1 + 74067 0.67 0.930664
Target:  5'- gAGGCUUCUGGUugGGCgaGCGCcgGGAGGAacGCg -3'
miRNA:   3'- -UCCGAAGGUCG--UCG--UGCG--UUUUCU--CG- -5'
13291 3' -52.5 NC_003409.1 + 78789 0.68 0.911435
Target:  5'- uGGCUuggguaaaguugccUCCGGCuGGCGCGUAAcGGcaGGCg -3'
miRNA:   3'- uCCGA--------------AGGUCG-UCGUGCGUUuUC--UCG- -5'
13291 3' -52.5 NC_003409.1 + 79415 0.69 0.863844
Target:  5'- aAGGCUgUCCAGagcGCugGCGGcAAGAGa -3'
miRNA:   3'- -UCCGA-AGGUCgu-CGugCGUU-UUCUCg -5'
13291 3' -52.5 NC_003409.1 + 83067 0.66 0.962104
Target:  5'- cAGGCcUCCGGCGGC-UGCGGuuucucGAcGGCa -3'
miRNA:   3'- -UCCGaAGGUCGUCGuGCGUU------UUcUCG- -5'
13291 3' -52.5 NC_003409.1 + 84056 0.7 0.847567
Target:  5'- uGGCUggggaaaCCgguGGCGGUugGCAAGuuAGAGCc -3'
miRNA:   3'- uCCGAa------GG---UCGUCGugCGUUU--UCUCG- -5'
13291 3' -52.5 NC_003409.1 + 87498 0.66 0.9656
Target:  5'- cGGUUUcCCGGCGGggaagcCACGCGc--GAGCa -3'
miRNA:   3'- uCCGAA-GGUCGUC------GUGCGUuuuCUCG- -5'
13291 3' -52.5 NC_003409.1 + 94284 0.67 0.949718
Target:  5'- cAGGCacugUCCacccucuaauacaAGCGGCcuuuggACGCGAGGGAGg -3'
miRNA:   3'- -UCCGa---AGG-------------UCGUCG------UGCGUUUUCUCg -5'
13291 3' -52.5 NC_003409.1 + 95599 0.66 0.954386
Target:  5'- gAGGCguccUCCAGCGGC-C-CAAAGGGa- -3'
miRNA:   3'- -UCCGa---AGGUCGUCGuGcGUUUUCUcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.