miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13294 3' -55.9 NC_003409.1 + 55750 0.67 0.87609
Target:  5'- aGCGCgaagCCGAGCuCGGgacucugGUACGCaaggcgGGCCa -3'
miRNA:   3'- -CGUGa---GGUUCG-GUCag-----CAUGCG------CCGG- -5'
13294 3' -55.9 NC_003409.1 + 58061 0.67 0.853509
Target:  5'- aGCAuUUCCAAGCCugcGGUUgaGUACGUGGg- -3'
miRNA:   3'- -CGU-GAGGUUCGG---UCAG--CAUGCGCCgg -5'
13294 3' -55.9 NC_003409.1 + 60778 0.75 0.413357
Target:  5'- aUACUCCu-GCCAGUCGaACGaGGCCc -3'
miRNA:   3'- cGUGAGGuuCGGUCAGCaUGCgCCGG- -5'
13294 3' -55.9 NC_003409.1 + 63169 0.72 0.59563
Target:  5'- gGCACUCC-AGUCAGUCu--CGCcagGGCCc -3'
miRNA:   3'- -CGUGAGGuUCGGUCAGcauGCG---CCGG- -5'
13294 3' -55.9 NC_003409.1 + 70198 0.71 0.626313
Target:  5'- cUACUCCAuauGCCGGg-GUGCGCGGg- -3'
miRNA:   3'- cGUGAGGUu--CGGUCagCAUGCGCCgg -5'
13294 3' -55.9 NC_003409.1 + 73843 0.66 0.915251
Target:  5'- aCAgUCCGGGcCCGGUgGUGCaGuuGCCa -3'
miRNA:   3'- cGUgAGGUUC-GGUCAgCAUG-CgcCGG- -5'
13294 3' -55.9 NC_003409.1 + 85803 0.66 0.883187
Target:  5'- --uCUCCAGG-CAGUUGgGCGgGGCUg -3'
miRNA:   3'- cguGAGGUUCgGUCAGCaUGCgCCGG- -5'
13294 3' -55.9 NC_003409.1 + 89103 0.66 0.895397
Target:  5'- cGCACgcagcauaagacCCGAGCCAGUCGcgcccuccauCGC-GCCu -3'
miRNA:   3'- -CGUGa-----------GGUUCGGUCAGCau--------GCGcCGG- -5'
13294 3' -55.9 NC_003409.1 + 90304 0.66 0.909306
Target:  5'- gGCG-UCCAgacgccGGCCAGUUGUugGCGa-- -3'
miRNA:   3'- -CGUgAGGU------UCGGUCAGCAugCGCcgg -5'
13294 3' -55.9 NC_003409.1 + 95556 0.68 0.811953
Target:  5'- uCGCUCUucaguuaucuGAGCgGGaCGUugGCGGCg -3'
miRNA:   3'- cGUGAGG----------UUCGgUCaGCAugCGCCGg -5'
13294 3' -55.9 NC_003409.1 + 104911 0.71 0.626313
Target:  5'- gGCGgUCUugguGAGgCGGUCGUGgGCGGUCu -3'
miRNA:   3'- -CGUgAGG----UUCgGUCAGCAUgCGCCGG- -5'
13294 3' -55.9 NC_003409.1 + 108433 0.71 0.626313
Target:  5'- cGCGCUCCAGGaCCuuGUCGUauAUGauGCCc -3'
miRNA:   3'- -CGUGAGGUUC-GGu-CAGCA--UGCgcCGG- -5'
13294 3' -55.9 NC_003409.1 + 108438 0.69 0.766321
Target:  5'- cCGCUCuCGAGCUAGagGc-CGCGGCUa -3'
miRNA:   3'- cGUGAG-GUUCGGUCagCauGCGCCGG- -5'
13294 3' -55.9 NC_003409.1 + 119956 0.73 0.545114
Target:  5'- gGCGC-CCAcGCCGG-CGccuggcACGCGGCCa -3'
miRNA:   3'- -CGUGaGGUuCGGUCaGCa-----UGCGCCGG- -5'
13294 3' -55.9 NC_003409.1 + 120295 0.66 0.903124
Target:  5'- gGCGCUCaacGCCAaUa-UGCGCGGCUg -3'
miRNA:   3'- -CGUGAGguuCGGUcAgcAUGCGCCGG- -5'
13294 3' -55.9 NC_003409.1 + 131224 0.66 0.887339
Target:  5'- gGCACUgcucCCAGGCagcaccaACGCGGCCa -3'
miRNA:   3'- -CGUGA----GGUUCGgucagcaUGCGCCGG- -5'
13294 3' -55.9 NC_003409.1 + 132116 0.67 0.853509
Target:  5'- gGCACUCCuguaggAGGCCGG-C-UugGUGGUCc -3'
miRNA:   3'- -CGUGAGG------UUCGGUCaGcAugCGCCGG- -5'
13294 3' -55.9 NC_003409.1 + 133017 0.79 0.269599
Target:  5'- -aGCUCCAGGCCGGUC---CGCGGCg -3'
miRNA:   3'- cgUGAGGUUCGGUCAGcauGCGCCGg -5'
13294 3' -55.9 NC_003409.1 + 133125 0.67 0.87609
Target:  5'- cGCAC-CCAccuGCCuG-CGgauccCGCGGCCg -3'
miRNA:   3'- -CGUGaGGUu--CGGuCaGCau---GCGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.