miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13295 3' -51.2 NC_003409.1 + 10055 0.67 0.971922
Target:  5'- --aGUCAgGUUAaUCGCGGACaUGGGCu -3'
miRNA:   3'- aggCAGUgCGGUaAGCGUUUG-AUCCG- -5'
13295 3' -51.2 NC_003409.1 + 14983 0.68 0.954611
Target:  5'- aCCGUCGCGCgAgaCGCugguAACUGGa- -3'
miRNA:   3'- aGGCAGUGCGgUaaGCGu---UUGAUCcg -5'
13295 3' -51.2 NC_003409.1 + 21362 0.68 0.962233
Target:  5'- uUCCGacacccCGCGCCGUUCGCuguucuccuguAAUUGGGa -3'
miRNA:   3'- -AGGCa-----GUGCGGUAAGCGu----------UUGAUCCg -5'
13295 3' -51.2 NC_003409.1 + 21491 0.71 0.880529
Target:  5'- aUCCGUCGCGUaaaugCGC-AGCU-GGCa -3'
miRNA:   3'- -AGGCAGUGCGguaa-GCGuUUGAuCCG- -5'
13295 3' -51.2 NC_003409.1 + 24218 0.66 0.985715
Target:  5'- uUCUGgggCGCGCCAgcgGUggGCgGGGCc -3'
miRNA:   3'- -AGGCa--GUGCGGUaagCGuuUGaUCCG- -5'
13295 3' -51.2 NC_003409.1 + 24360 0.66 0.988903
Target:  5'- gCCG-CGCGCgCAgugCGCGAGgggGGGCu -3'
miRNA:   3'- aGGCaGUGCG-GUaa-GCGUUUga-UCCG- -5'
13295 3' -51.2 NC_003409.1 + 35797 0.67 0.979678
Target:  5'- gCCGgcagaCGCGUCAaugggggaCGUggGCUGGGCg -3'
miRNA:   3'- aGGCa----GUGCGGUaa------GCGuuUGAUCCG- -5'
13295 3' -51.2 NC_003409.1 + 39557 0.66 0.988903
Target:  5'- aCCGUCaaaGCGCC----GCAuGGCUAGGUg -3'
miRNA:   3'- aGGCAG---UGCGGuaagCGU-UUGAUCCG- -5'
13295 3' -51.2 NC_003409.1 + 40729 1.13 0.004269
Target:  5'- gUCCGUCACGCCAUUCGCAAACUAGGCu -3'
miRNA:   3'- -AGGCAGUGCGGUAAGCGUUUGAUCCG- -5'
13295 3' -51.2 NC_003409.1 + 42763 0.71 0.880529
Target:  5'- gCUGUCugGCCAccaacUCGCAccuGC-AGGCa -3'
miRNA:   3'- aGGCAGugCGGUa----AGCGUu--UGaUCCG- -5'
13295 3' -51.2 NC_003409.1 + 47286 0.68 0.968917
Target:  5'- aUCCaucCGCGUUAggCGCAGGCUguccGGGCg -3'
miRNA:   3'- -AGGca-GUGCGGUaaGCGUUUGA----UCCG- -5'
13295 3' -51.2 NC_003409.1 + 47314 0.66 0.991509
Target:  5'- aCUGgggCACGCUAUUCuGCAgcAGCUGuuGGUg -3'
miRNA:   3'- aGGCa--GUGCGGUAAG-CGU--UUGAU--CCG- -5'
13295 3' -51.2 NC_003409.1 + 50921 0.67 0.98187
Target:  5'- gCCGgagaGCGUCAUcUGCGAACUaacGGGUa -3'
miRNA:   3'- aGGCag--UGCGGUAaGCGUUUGA---UCCG- -5'
13295 3' -51.2 NC_003409.1 + 54367 0.66 0.986403
Target:  5'- cUCCcugCACGCCugcucugucuacCGCGAACUucAGGCu -3'
miRNA:   3'- -AGGca-GUGCGGuaa---------GCGUUUGA--UCCG- -5'
13295 3' -51.2 NC_003409.1 + 55296 0.66 0.988759
Target:  5'- gCCGcC-CGCCAUUCGCu-ACUucucggauacaaaGGGUa -3'
miRNA:   3'- aGGCaGuGCGGUAAGCGuuUGA-------------UCCG- -5'
13295 3' -51.2 NC_003409.1 + 59077 0.7 0.914107
Target:  5'- aCCGUCgGCGCCGacgUCGCcag--AGGCa -3'
miRNA:   3'- aGGCAG-UGCGGUa--AGCGuuugaUCCG- -5'
13295 3' -51.2 NC_003409.1 + 65706 0.69 0.941333
Target:  5'- gUCCGUCugGgugggagaccCCA--CGCAGACUaugcaAGGCa -3'
miRNA:   3'- -AGGCAGugC----------GGUaaGCGUUUGA-----UCCG- -5'
13295 3' -51.2 NC_003409.1 + 74099 0.67 0.977295
Target:  5'- cUCCGUCAUGaCCGccCGgAAGCUcuucgcccgAGGCu -3'
miRNA:   3'- -AGGCAGUGC-GGUaaGCgUUUGA---------UCCG- -5'
13295 3' -51.2 NC_003409.1 + 78206 0.66 0.990274
Target:  5'- aUCCG--GCGUCGUUUGCAuACaUAGGg -3'
miRNA:   3'- -AGGCagUGCGGUAAGCGUuUG-AUCCg -5'
13295 3' -51.2 NC_003409.1 + 81169 0.67 0.974712
Target:  5'- cUUCGcCGCGCCAcUCGUccgguGGAC-AGGCu -3'
miRNA:   3'- -AGGCaGUGCGGUaAGCG-----UUUGaUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.