miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13295 3' -51.2 NC_003409.1 + 82899 0.66 0.991509
Target:  5'- gCCGUCGagaaaccgcagcCGCCGgaggccUGCAAACgcuugGGGCu -3'
miRNA:   3'- aGGCAGU------------GCGGUaa----GCGUUUGa----UCCG- -5'
13295 3' -51.2 NC_003409.1 + 84171 0.69 0.950435
Target:  5'- cCCGcUugGCUAUcUCGCAGGCcAGGUu -3'
miRNA:   3'- aGGCaGugCGGUA-AGCGUUUGaUCCG- -5'
13295 3' -51.2 NC_003409.1 + 84718 0.69 0.930681
Target:  5'- cCCGUCucuGCGCCAUUCaaaacagggguccGCGAG--GGGCg -3'
miRNA:   3'- aGGCAG---UGCGGUAAG-------------CGUUUgaUCCG- -5'
13295 3' -51.2 NC_003409.1 + 84902 0.66 0.986403
Target:  5'- aCCaGUUACGCCccUCGCGGACcccuguuuugaauGGCg -3'
miRNA:   3'- aGG-CAGUGCGGuaAGCGUUUGau-----------CCG- -5'
13295 3' -51.2 NC_003409.1 + 90678 0.67 0.98187
Target:  5'- cCCGUCuGCGugaCCGgcacaUCGCAAaagGCUGGGUg -3'
miRNA:   3'- aGGCAG-UGC---GGUa----AGCGUU---UGAUCCG- -5'
13295 3' -51.2 NC_003409.1 + 105181 0.68 0.958542
Target:  5'- cUCUGUCAgGCCGUgcUgGgGGAUUGGGUu -3'
miRNA:   3'- -AGGCAGUgCGGUA--AgCgUUUGAUCCG- -5'
13295 3' -51.2 NC_003409.1 + 105221 0.68 0.954611
Target:  5'- gCUGUgGCGCCuggggUCGCcgggGGAgUGGGCg -3'
miRNA:   3'- aGGCAgUGCGGua---AGCG----UUUgAUCCG- -5'
13295 3' -51.2 NC_003409.1 + 109167 0.67 0.977295
Target:  5'- gUUCGUgGcCGCCGgcugggaCGCAGGCcGGGCg -3'
miRNA:   3'- -AGGCAgU-GCGGUaa-----GCGUUUGaUCCG- -5'
13295 3' -51.2 NC_003409.1 + 110289 0.66 0.990784
Target:  5'- aCCGUCcuucguggugcgGCgGCCAgggaggcgaauggcUCGCGAuCUGGGCa -3'
miRNA:   3'- aGGCAG------------UG-CGGUa-------------AGCGUUuGAUCCG- -5'
13295 3' -51.2 NC_003409.1 + 111904 0.69 0.931214
Target:  5'- aCCGUCucCGCCAgggaCGCcGAUaGGGCg -3'
miRNA:   3'- aGGCAGu-GCGGUaa--GCGuUUGaUCCG- -5'
13295 3' -51.2 NC_003409.1 + 113540 0.68 0.964677
Target:  5'- aCUGgCACGCCAUUCucgcccucgaacacGCGgugggccgucAGCUGGGCc -3'
miRNA:   3'- aGGCaGUGCGGUAAG--------------CGU----------UUGAUCCG- -5'
13295 3' -51.2 NC_003409.1 + 115643 0.67 0.974712
Target:  5'- uUCCGgUAUGCCGcUCGCGggUgcGGUg -3'
miRNA:   3'- -AGGCaGUGCGGUaAGCGUuuGauCCG- -5'
13295 3' -51.2 NC_003409.1 + 117541 0.71 0.873082
Target:  5'- uUCCGUCGCGCUggUUGau-GCgcGGCa -3'
miRNA:   3'- -AGGCAGUGCGGuaAGCguuUGauCCG- -5'
13295 3' -51.2 NC_003409.1 + 119791 0.67 0.977295
Target:  5'- gCCG-CGUGCCAggCGCcGGCgUGGGCg -3'
miRNA:   3'- aGGCaGUGCGGUaaGCGuUUG-AUCCG- -5'
13295 3' -51.2 NC_003409.1 + 132960 0.67 0.98187
Target:  5'- gCCG-CGCGCCugugCGCGuGCcAGGUa -3'
miRNA:   3'- aGGCaGUGCGGuaa-GCGUuUGaUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.