Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13295 | 3' | -51.2 | NC_003409.1 | + | 105221 | 0.68 | 0.954611 |
Target: 5'- gCUGUgGCGCCuggggUCGCcgggGGAgUGGGCg -3' miRNA: 3'- aGGCAgUGCGGua---AGCG----UUUgAUCCG- -5' |
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13295 | 3' | -51.2 | NC_003409.1 | + | 105181 | 0.68 | 0.958542 |
Target: 5'- cUCUGUCAgGCCGUgcUgGgGGAUUGGGUu -3' miRNA: 3'- -AGGCAGUgCGGUA--AgCgUUUGAUCCG- -5' |
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13295 | 3' | -51.2 | NC_003409.1 | + | 47286 | 0.68 | 0.968917 |
Target: 5'- aUCCaucCGCGUUAggCGCAGGCUguccGGGCg -3' miRNA: 3'- -AGGca-GUGCGGUaaGCGUUUGA----UCCG- -5' |
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13295 | 3' | -51.2 | NC_003409.1 | + | 113540 | 0.68 | 0.964677 |
Target: 5'- aCUGgCACGCCAUUCucgcccucgaacacGCGgugggccgucAGCUGGGCc -3' miRNA: 3'- aGGCaGUGCGGUAAG--------------CGU----------UUGAUCCG- -5' |
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13295 | 3' | -51.2 | NC_003409.1 | + | 21362 | 0.68 | 0.962233 |
Target: 5'- uUCCGacacccCGCGCCGUUCGCuguucuccuguAAUUGGGa -3' miRNA: 3'- -AGGCa-----GUGCGGUAAGCGu----------UUGAUCCg -5' |
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13295 | 3' | -51.2 | NC_003409.1 | + | 14983 | 0.68 | 0.954611 |
Target: 5'- aCCGUCGCGCgAgaCGCugguAACUGGa- -3' miRNA: 3'- aGGCAGUGCGgUaaGCGu---UUGAUCcg -5' |
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13295 | 3' | -51.2 | NC_003409.1 | + | 84171 | 0.69 | 0.950435 |
Target: 5'- cCCGcUugGCUAUcUCGCAGGCcAGGUu -3' miRNA: 3'- aGGCaGugCGGUA-AGCGUUUGaUCCG- -5' |
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13295 | 3' | -51.2 | NC_003409.1 | + | 84718 | 0.69 | 0.930681 |
Target: 5'- cCCGUCucuGCGCCAUUCaaaacagggguccGCGAG--GGGCg -3' miRNA: 3'- aGGCAG---UGCGGUAAG-------------CGUUUgaUCCG- -5' |
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13295 | 3' | -51.2 | NC_003409.1 | + | 111904 | 0.69 | 0.931214 |
Target: 5'- aCCGUCucCGCCAgggaCGCcGAUaGGGCg -3' miRNA: 3'- aGGCAGu-GCGGUaa--GCGuUUGaUCCG- -5' |
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13295 | 3' | -51.2 | NC_003409.1 | + | 65706 | 0.69 | 0.941333 |
Target: 5'- gUCCGUCugGgugggagaccCCA--CGCAGACUaugcaAGGCa -3' miRNA: 3'- -AGGCAGugC----------GGUaaGCGUUUGA-----UCCG- -5' |
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13295 | 3' | -51.2 | NC_003409.1 | + | 59077 | 0.7 | 0.914107 |
Target: 5'- aCCGUCgGCGCCGacgUCGCcag--AGGCa -3' miRNA: 3'- aGGCAG-UGCGGUa--AGCGuuugaUCCG- -5' |
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13295 | 3' | -51.2 | NC_003409.1 | + | 21491 | 0.71 | 0.880529 |
Target: 5'- aUCCGUCGCGUaaaugCGC-AGCU-GGCa -3' miRNA: 3'- -AGGCAGUGCGguaa-GCGuUUGAuCCG- -5' |
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13295 | 3' | -51.2 | NC_003409.1 | + | 42763 | 0.71 | 0.880529 |
Target: 5'- gCUGUCugGCCAccaacUCGCAccuGC-AGGCa -3' miRNA: 3'- aGGCAGugCGGUa----AGCGUu--UGaUCCG- -5' |
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13295 | 3' | -51.2 | NC_003409.1 | + | 117541 | 0.71 | 0.873082 |
Target: 5'- uUCCGUCGCGCUggUUGau-GCgcGGCa -3' miRNA: 3'- -AGGCAGUGCGGuaAGCguuUGauCCG- -5' |
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13295 | 3' | -51.2 | NC_003409.1 | + | 40729 | 1.13 | 0.004269 |
Target: 5'- gUCCGUCACGCCAUUCGCAAACUAGGCu -3' miRNA: 3'- -AGGCAGUGCGGUAAGCGUUUGAUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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