Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13295 | 3' | -51.2 | NC_003409.1 | + | 110289 | 0.66 | 0.990784 |
Target: 5'- aCCGUCcuucguggugcgGCgGCCAgggaggcgaauggcUCGCGAuCUGGGCa -3' miRNA: 3'- aGGCAG------------UG-CGGUa-------------AGCGUUuGAUCCG- -5' |
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13295 | 3' | -51.2 | NC_003409.1 | + | 10055 | 0.67 | 0.971922 |
Target: 5'- --aGUCAgGUUAaUCGCGGACaUGGGCu -3' miRNA: 3'- aggCAGUgCGGUaAGCGUUUG-AUCCG- -5' |
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13295 | 3' | -51.2 | NC_003409.1 | + | 47286 | 0.68 | 0.968917 |
Target: 5'- aUCCaucCGCGUUAggCGCAGGCUguccGGGCg -3' miRNA: 3'- -AGGca-GUGCGGUaaGCGUUUGA----UCCG- -5' |
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13295 | 3' | -51.2 | NC_003409.1 | + | 105181 | 0.68 | 0.958542 |
Target: 5'- cUCUGUCAgGCCGUgcUgGgGGAUUGGGUu -3' miRNA: 3'- -AGGCAGUgCGGUA--AgCgUUUGAUCCG- -5' |
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13295 | 3' | -51.2 | NC_003409.1 | + | 105221 | 0.68 | 0.954611 |
Target: 5'- gCUGUgGCGCCuggggUCGCcgggGGAgUGGGCg -3' miRNA: 3'- aGGCAgUGCGGua---AGCG----UUUgAUCCG- -5' |
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13295 | 3' | -51.2 | NC_003409.1 | + | 65706 | 0.69 | 0.941333 |
Target: 5'- gUCCGUCugGgugggagaccCCA--CGCAGACUaugcaAGGCa -3' miRNA: 3'- -AGGCAGugC----------GGUaaGCGUUUGA-----UCCG- -5' |
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13295 | 3' | -51.2 | NC_003409.1 | + | 111904 | 0.69 | 0.931214 |
Target: 5'- aCCGUCucCGCCAgggaCGCcGAUaGGGCg -3' miRNA: 3'- aGGCAGu-GCGGUaa--GCGuUUGaUCCG- -5' |
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13295 | 3' | -51.2 | NC_003409.1 | + | 42763 | 0.71 | 0.880529 |
Target: 5'- gCUGUCugGCCAccaacUCGCAccuGC-AGGCa -3' miRNA: 3'- aGGCAGugCGGUa----AGCGUu--UGaUCCG- -5' |
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13295 | 3' | -51.2 | NC_003409.1 | + | 40729 | 1.13 | 0.004269 |
Target: 5'- gUCCGUCACGCCAUUCGCAAACUAGGCu -3' miRNA: 3'- -AGGCAGUGCGGUAAGCGUUUGAUCCG- -5' |
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13295 | 3' | -51.2 | NC_003409.1 | + | 115643 | 0.67 | 0.974712 |
Target: 5'- uUCCGgUAUGCCGcUCGCGggUgcGGUg -3' miRNA: 3'- -AGGCaGUGCGGUaAGCGUuuGauCCG- -5' |
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13295 | 3' | -51.2 | NC_003409.1 | + | 81169 | 0.67 | 0.974712 |
Target: 5'- cUUCGcCGCGCCAcUCGUccgguGGAC-AGGCu -3' miRNA: 3'- -AGGCaGUGCGGUaAGCG-----UUUGaUCCG- -5' |
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13295 | 3' | -51.2 | NC_003409.1 | + | 74099 | 0.67 | 0.977295 |
Target: 5'- cUCCGUCAUGaCCGccCGgAAGCUcuucgcccgAGGCu -3' miRNA: 3'- -AGGCAGUGC-GGUaaGCgUUUGA---------UCCG- -5' |
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13295 | 3' | -51.2 | NC_003409.1 | + | 78206 | 0.66 | 0.990274 |
Target: 5'- aUCCG--GCGUCGUUUGCAuACaUAGGg -3' miRNA: 3'- -AGGCagUGCGGUAAGCGUuUG-AUCCg -5' |
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13295 | 3' | -51.2 | NC_003409.1 | + | 24360 | 0.66 | 0.988903 |
Target: 5'- gCCG-CGCGCgCAgugCGCGAGgggGGGCu -3' miRNA: 3'- aGGCaGUGCG-GUaa-GCGUUUga-UCCG- -5' |
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13295 | 3' | -51.2 | NC_003409.1 | + | 39557 | 0.66 | 0.988903 |
Target: 5'- aCCGUCaaaGCGCC----GCAuGGCUAGGUg -3' miRNA: 3'- aGGCAG---UGCGGuaagCGU-UUGAUCCG- -5' |
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13295 | 3' | -51.2 | NC_003409.1 | + | 54367 | 0.66 | 0.986403 |
Target: 5'- cUCCcugCACGCCugcucugucuacCGCGAACUucAGGCu -3' miRNA: 3'- -AGGca-GUGCGGuaa---------GCGUUUGA--UCCG- -5' |
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13295 | 3' | -51.2 | NC_003409.1 | + | 84902 | 0.66 | 0.986403 |
Target: 5'- aCCaGUUACGCCccUCGCGGACcccuguuuugaauGGCg -3' miRNA: 3'- aGG-CAGUGCGGuaAGCGUUUGau-----------CCG- -5' |
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13295 | 3' | -51.2 | NC_003409.1 | + | 24218 | 0.66 | 0.985715 |
Target: 5'- uUCUGgggCGCGCCAgcgGUggGCgGGGCc -3' miRNA: 3'- -AGGCa--GUGCGGUaagCGuuUGaUCCG- -5' |
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13295 | 3' | -51.2 | NC_003409.1 | + | 132960 | 0.67 | 0.98187 |
Target: 5'- gCCG-CGCGCCugugCGCGuGCcAGGUa -3' miRNA: 3'- aGGCaGUGCGGuaa-GCGUuUGaUCCG- -5' |
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13295 | 3' | -51.2 | NC_003409.1 | + | 109167 | 0.67 | 0.977295 |
Target: 5'- gUUCGUgGcCGCCGgcugggaCGCAGGCcGGGCg -3' miRNA: 3'- -AGGCAgU-GCGGUaa-----GCGUUUGaUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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