Results 41 - 60 of 70 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13295 | 5' | -56.6 | NC_003409.1 | + | 44970 | 0.69 | 0.781094 |
Target: 5'- cCCACCGuc---UCGUGUCCcGCGAGCu -3' miRNA: 3'- -GGUGGCuugccGGCGCAGGuUGCUCG- -5' |
|||||||
13295 | 5' | -56.6 | NC_003409.1 | + | 113811 | 0.69 | 0.781094 |
Target: 5'- -gGCCGuGCGGUCGCG-CUggUGAGa -3' miRNA: 3'- ggUGGCuUGCCGGCGCaGGuuGCUCg -5' |
|||||||
13295 | 5' | -56.6 | NC_003409.1 | + | 75423 | 0.69 | 0.780184 |
Target: 5'- cCCACgCGAaagcaaggcagauACGGCCGCGUgUCAuCGAaaGCa -3' miRNA: 3'- -GGUG-GCU-------------UGCCGGCGCA-GGUuGCU--CG- -5' |
|||||||
13295 | 5' | -56.6 | NC_003409.1 | + | 40260 | 0.69 | 0.771935 |
Target: 5'- aCUACCGGAgugcCGGCUG-G-CCAuaACGAGCg -3' miRNA: 3'- -GGUGGCUU----GCCGGCgCaGGU--UGCUCG- -5' |
|||||||
13295 | 5' | -56.6 | NC_003409.1 | + | 62705 | 0.69 | 0.771935 |
Target: 5'- aUACCGuGCaugacgaaGGCCGCGUCCAucccCG-GCg -3' miRNA: 3'- gGUGGCuUG--------CCGGCGCAGGUu---GCuCG- -5' |
|||||||
13295 | 5' | -56.6 | NC_003409.1 | + | 113795 | 0.69 | 0.762655 |
Target: 5'- aCCACCcuguGCGGCCGaaUCCGccACGGGg -3' miRNA: 3'- -GGUGGcu--UGCCGGCgcAGGU--UGCUCg -5' |
|||||||
13295 | 5' | -56.6 | NC_003409.1 | + | 104214 | 0.69 | 0.734178 |
Target: 5'- cUCAUCGGACaGGaCGCGgCCAuccGCGAGCc -3' miRNA: 3'- -GGUGGCUUG-CCgGCGCaGGU---UGCUCG- -5' |
|||||||
13295 | 5' | -56.6 | NC_003409.1 | + | 43924 | 0.7 | 0.724503 |
Target: 5'- uCCGCCaGAGCGGCCuuGUCaccuuccacagaCGGCaGAGCg -3' miRNA: 3'- -GGUGG-CUUGCCGGcgCAG------------GUUG-CUCG- -5' |
|||||||
13295 | 5' | -56.6 | NC_003409.1 | + | 119413 | 0.7 | 0.724503 |
Target: 5'- gCCuCCGAauuugauugACGGCUgggGCGUCCAAUGgaauGGCg -3' miRNA: 3'- -GGuGGCU---------UGCCGG---CGCAGGUUGC----UCG- -5' |
|||||||
13295 | 5' | -56.6 | NC_003409.1 | + | 23597 | 0.7 | 0.724503 |
Target: 5'- gCCuCCGAauuugauugACGGCUgggGCGUCCAAUGgaauGGCg -3' miRNA: 3'- -GGuGGCU---------UGCCGG---CGCAGGUUGC----UCG- -5' |
|||||||
13295 | 5' | -56.6 | NC_003409.1 | + | 67898 | 0.7 | 0.724503 |
Target: 5'- uCCAacucuCCGGACgugaacaaugaGGCCGCGUuuaCCGACGcGCg -3' miRNA: 3'- -GGU-----GGCUUG-----------CCGGCGCA---GGUUGCuCG- -5' |
|||||||
13295 | 5' | -56.6 | NC_003409.1 | + | 116248 | 0.7 | 0.724503 |
Target: 5'- gCAUCGAggagcuguccgGCGGCCGCGgaugCCc-UGAGCu -3' miRNA: 3'- gGUGGCU-----------UGCCGGCGCa---GGuuGCUCG- -5' |
|||||||
13295 | 5' | -56.6 | NC_003409.1 | + | 111856 | 0.7 | 0.714751 |
Target: 5'- gCCACCGcgggGGCGGCCGUuUCCGucguggAUGAGa -3' miRNA: 3'- -GGUGGC----UUGCCGGCGcAGGU------UGCUCg -5' |
|||||||
13295 | 5' | -56.6 | NC_003409.1 | + | 107522 | 0.7 | 0.69901 |
Target: 5'- aCGCCGugguucgccccuuccGGCGGCCGUggGUCCAGCGcuCu -3' miRNA: 3'- gGUGGC---------------UUGCCGGCG--CAGGUUGCucG- -5' |
|||||||
13295 | 5' | -56.6 | NC_003409.1 | + | 77266 | 0.7 | 0.695051 |
Target: 5'- gUACCuGAcAUGGCCGCGcCCAG-GGGCa -3' miRNA: 3'- gGUGG-CU-UGCCGGCGCaGGUUgCUCG- -5' |
|||||||
13295 | 5' | -56.6 | NC_003409.1 | + | 11487 | 0.71 | 0.645059 |
Target: 5'- aUCugCGGACGGUaauuugugucUGUGUgCAACGAGUa -3' miRNA: 3'- -GGugGCUUGCCG----------GCGCAgGUUGCUCG- -5' |
|||||||
13295 | 5' | -56.6 | NC_003409.1 | + | 106138 | 0.71 | 0.645059 |
Target: 5'- aCGCCgucuuGAAUGGUuugUGCGUCCuGGCGGGCa -3' miRNA: 3'- gGUGG-----CUUGCCG---GCGCAGG-UUGCUCG- -5' |
|||||||
13295 | 5' | -56.6 | NC_003409.1 | + | 14974 | 0.71 | 0.624936 |
Target: 5'- gCGgCGGAgGGCCGCGUacccaaaugCCGAUGGGUu -3' miRNA: 3'- gGUgGCUUgCCGGCGCA---------GGUUGCUCG- -5' |
|||||||
13295 | 5' | -56.6 | NC_003409.1 | + | 108991 | 0.72 | 0.614879 |
Target: 5'- cCCACgCGccCGGCCuGCGUCCcAGCcGGCg -3' miRNA: 3'- -GGUG-GCuuGCCGG-CGCAGG-UUGcUCG- -5' |
|||||||
13295 | 5' | -56.6 | NC_003409.1 | + | 131400 | 0.72 | 0.604835 |
Target: 5'- gCGCCGugUGGCCGCGUuggugcugCCuGgGAGCa -3' miRNA: 3'- gGUGGCuuGCCGGCGCA--------GGuUgCUCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home