miRNA display CGI


Results 21 - 40 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13295 5' -56.6 NC_003409.1 + 74516 0.67 0.871575
Target:  5'- aCCGCagaGGCGGUggCGUGUCCAGCuGGUa -3'
miRNA:   3'- -GGUGgc-UUGCCG--GCGCAGGUUGcUCG- -5'
13295 5' -56.6 NC_003409.1 + 113459 0.67 0.871575
Target:  5'- gCCGCCGAccaugcuaggGCGauaCCGCG-CCAcguAUGGGCa -3'
miRNA:   3'- -GGUGGCU----------UGCc--GGCGCaGGU---UGCUCG- -5'
13295 5' -56.6 NC_003409.1 + 83064 0.67 0.871575
Target:  5'- gCCuCCG-GCGGCUGCGguuucUCGACG-GCa -3'
miRNA:   3'- -GGuGGCuUGCCGGCGCa----GGUUGCuCG- -5'
13295 5' -56.6 NC_003409.1 + 14046 0.67 0.864262
Target:  5'- aCCACCGAGCuaaGCCGCccgCUGGCGGa- -3'
miRNA:   3'- -GGUGGCUUGc--CGGCGca-GGUUGCUcg -5'
13295 5' -56.6 NC_003409.1 + 133114 0.67 0.864262
Target:  5'- gCCugCGGaucccGCGGCCG-GUCCGgaugccgugaagGCG-GCg -3'
miRNA:   3'- -GGugGCU-----UGCCGGCgCAGGU------------UGCuCG- -5'
13295 5' -56.6 NC_003409.1 + 132948 0.67 0.856747
Target:  5'- gCAuCCGGAcCGGCCGCGggaUCC-GCaGGCa -3'
miRNA:   3'- gGU-GGCUU-GCCGGCGC---AGGuUGcUCG- -5'
13295 5' -56.6 NC_003409.1 + 87494 0.67 0.856747
Target:  5'- gCACCGGuuuccCGGCgGgGaagCCAcgcGCGAGCa -3'
miRNA:   3'- gGUGGCUu----GCCGgCgCa--GGU---UGCUCG- -5'
13295 5' -56.6 NC_003409.1 + 72758 0.67 0.856747
Target:  5'- aCCAaaGGcGCGGCCGgGUaCAACGuGCc -3'
miRNA:   3'- -GGUggCU-UGCCGGCgCAgGUUGCuCG- -5'
13295 5' -56.6 NC_003409.1 + 93355 0.67 0.856747
Target:  5'- gUCAUCGAGCuuauuagcuccGGauuccCCGCGUCCcuccACGAGCc -3'
miRNA:   3'- -GGUGGCUUG-----------CC-----GGCGCAGGu---UGCUCG- -5'
13295 5' -56.6 NC_003409.1 + 22399 0.67 0.849036
Target:  5'- gCCugCGaAGCGGCgcaCGCGUCUucugAugGAGa -3'
miRNA:   3'- -GGugGC-UUGCCG---GCGCAGG----UugCUCg -5'
13295 5' -56.6 NC_003409.1 + 58836 0.67 0.849036
Target:  5'- aCGUCGAGCGGuuCCcCGUCCAcgucuACGGGCu -3'
miRNA:   3'- gGUGGCUUGCC--GGcGCAGGU-----UGCUCG- -5'
13295 5' -56.6 NC_003409.1 + 107486 0.67 0.849036
Target:  5'- aCGCuUGGACGGggGCGUCC-GCGGGUa -3'
miRNA:   3'- gGUG-GCUUGCCggCGCAGGuUGCUCG- -5'
13295 5' -56.6 NC_003409.1 + 79286 0.68 0.828113
Target:  5'- gUCACCGAgGCGcuuguaagcgugguuGCCGCGUCCAAaaaGGUu -3'
miRNA:   3'- -GGUGGCU-UGC---------------CGGCGCAGGUUgc-UCG- -5'
13295 5' -56.6 NC_003409.1 + 15995 0.68 0.824788
Target:  5'- cCCACaCGGGCucGCCGCG-CC--CGAGCu -3'
miRNA:   3'- -GGUG-GCUUGc-CGGCGCaGGuuGCUCG- -5'
13295 5' -56.6 NC_003409.1 + 108611 0.68 0.824788
Target:  5'- gUCGCCGuGCGuaGCCGCGgccUCUAGCucgaGAGCg -3'
miRNA:   3'- -GGUGGCuUGC--CGGCGC---AGGUUG----CUCG- -5'
13295 5' -56.6 NC_003409.1 + 79421 0.68 0.816356
Target:  5'- gCGCCGAGaCGaucGCCGaCGUCCuuACGGGg -3'
miRNA:   3'- gGUGGCUU-GC---CGGC-GCAGGu-UGCUCg -5'
13295 5' -56.6 NC_003409.1 + 31922 0.68 0.799017
Target:  5'- aCCACCcacuCGGCgCGUGUCCGuacACG-GCc -3'
miRNA:   3'- -GGUGGcuu-GCCG-GCGCAGGU---UGCuCG- -5'
13295 5' -56.6 NC_003409.1 + 4816 0.68 0.799017
Target:  5'- -aACCGAGaaGCUaGCGUCCAugG-GCa -3'
miRNA:   3'- ggUGGCUUgcCGG-CGCAGGUugCuCG- -5'
13295 5' -56.6 NC_003409.1 + 69813 0.68 0.799017
Target:  5'- uCCACaGGACGGCaaauaGCGcaaagauccCCAugGGGCa -3'
miRNA:   3'- -GGUGgCUUGCCGg----CGCa--------GGUugCUCG- -5'
13295 5' -56.6 NC_003409.1 + 121372 0.68 0.790124
Target:  5'- uCCACCaGGCGGCguUGUGgCC-ACGGGCg -3'
miRNA:   3'- -GGUGGcUUGCCG--GCGCaGGuUGCUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.