Results 21 - 40 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13295 | 5' | -56.6 | NC_003409.1 | + | 44063 | 0.66 | 0.87868 |
Target: 5'- gUACUGGAUGcGCCG-GUUCAGUGGGCa -3' miRNA: 3'- gGUGGCUUGC-CGGCgCAGGUUGCUCG- -5' |
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13295 | 5' | -56.6 | NC_003409.1 | + | 44970 | 0.69 | 0.781094 |
Target: 5'- cCCACCGuc---UCGUGUCCcGCGAGCu -3' miRNA: 3'- -GGUGGCuugccGGCGCAGGuUGCUCG- -5' |
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13295 | 5' | -56.6 | NC_003409.1 | + | 49674 | 0.66 | 0.87868 |
Target: 5'- gCCAgCCaGACGGUgGUGUCCAACa--- -3' miRNA: 3'- -GGU-GGcUUGCCGgCGCAGGUUGcucg -5' |
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13295 | 5' | -56.6 | NC_003409.1 | + | 51992 | 0.72 | 0.584812 |
Target: 5'- uCCACgGGugaGuGCCGgGUCCGGCGuAGCa -3' miRNA: 3'- -GGUGgCUug-C-CGGCgCAGGUUGC-UCG- -5' |
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13295 | 5' | -56.6 | NC_003409.1 | + | 58836 | 0.67 | 0.849036 |
Target: 5'- aCGUCGAGCGGuuCCcCGUCCAcgucuACGGGCu -3' miRNA: 3'- gGUGGCUUGCC--GGcGCAGGU-----UGCUCG- -5' |
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13295 | 5' | -56.6 | NC_003409.1 | + | 62705 | 0.69 | 0.771935 |
Target: 5'- aUACCGuGCaugacgaaGGCCGCGUCCAucccCG-GCg -3' miRNA: 3'- gGUGGCuUG--------CCGGCGCAGGUu---GCuCG- -5' |
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13295 | 5' | -56.6 | NC_003409.1 | + | 67620 | 0.66 | 0.885573 |
Target: 5'- uCCGCCguGAGCGuGaUCGUGUCUccguCGAGCa -3' miRNA: 3'- -GGUGG--CUUGC-C-GGCGCAGGuu--GCUCG- -5' |
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13295 | 5' | -56.6 | NC_003409.1 | + | 67898 | 0.7 | 0.724503 |
Target: 5'- uCCAacucuCCGGACgugaacaaugaGGCCGCGUuuaCCGACGcGCg -3' miRNA: 3'- -GGU-----GGCUUG-----------CCGGCGCA---GGUUGCuCG- -5' |
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13295 | 5' | -56.6 | NC_003409.1 | + | 69813 | 0.68 | 0.799017 |
Target: 5'- uCCACaGGACGGCaaauaGCGcaaagauccCCAugGGGCa -3' miRNA: 3'- -GGUGgCUUGCCGg----CGCa--------GGUugCUCG- -5' |
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13295 | 5' | -56.6 | NC_003409.1 | + | 72758 | 0.67 | 0.856747 |
Target: 5'- aCCAaaGGcGCGGCCGgGUaCAACGuGCc -3' miRNA: 3'- -GGUggCU-UGCCGGCgCAgGUUGCuCG- -5' |
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13295 | 5' | -56.6 | NC_003409.1 | + | 74516 | 0.67 | 0.871575 |
Target: 5'- aCCGCagaGGCGGUggCGUGUCCAGCuGGUa -3' miRNA: 3'- -GGUGgc-UUGCCG--GCGCAGGUUGcUCG- -5' |
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13295 | 5' | -56.6 | NC_003409.1 | + | 75423 | 0.69 | 0.780184 |
Target: 5'- cCCACgCGAaagcaaggcagauACGGCCGCGUgUCAuCGAaaGCa -3' miRNA: 3'- -GGUG-GCU-------------UGCCGGCGCA-GGUuGCU--CG- -5' |
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13295 | 5' | -56.6 | NC_003409.1 | + | 77266 | 0.7 | 0.695051 |
Target: 5'- gUACCuGAcAUGGCCGCGcCCAG-GGGCa -3' miRNA: 3'- gGUGG-CU-UGCCGGCGCaGGUUgCUCG- -5' |
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13295 | 5' | -56.6 | NC_003409.1 | + | 79286 | 0.68 | 0.828113 |
Target: 5'- gUCACCGAgGCGcuuguaagcgugguuGCCGCGUCCAAaaaGGUu -3' miRNA: 3'- -GGUGGCU-UGC---------------CGGCGCAGGUUgc-UCG- -5' |
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13295 | 5' | -56.6 | NC_003409.1 | + | 79421 | 0.68 | 0.816356 |
Target: 5'- gCGCCGAGaCGaucGCCGaCGUCCuuACGGGg -3' miRNA: 3'- gGUGGCUU-GC---CGGC-GCAGGu-UGCUCg -5' |
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13295 | 5' | -56.6 | NC_003409.1 | + | 81275 | 0.66 | 0.898705 |
Target: 5'- gCCACC-AugGGCUcCGacCCAACGAcGCa -3' miRNA: 3'- -GGUGGcUugCCGGcGCa-GGUUGCU-CG- -5' |
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13295 | 5' | -56.6 | NC_003409.1 | + | 83064 | 0.67 | 0.871575 |
Target: 5'- gCCuCCG-GCGGCUGCGguuucUCGACG-GCa -3' miRNA: 3'- -GGuGGCuUGCCGGCGCa----GGUUGCuCG- -5' |
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13295 | 5' | -56.6 | NC_003409.1 | + | 87494 | 0.67 | 0.856747 |
Target: 5'- gCACCGGuuuccCGGCgGgGaagCCAcgcGCGAGCa -3' miRNA: 3'- gGUGGCUu----GCCGgCgCa--GGU---UGCUCG- -5' |
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13295 | 5' | -56.6 | NC_003409.1 | + | 87602 | 0.66 | 0.89225 |
Target: 5'- cCCGCUuGGGCGuGCgGCGgaaUCCAACuggGGGCa -3' miRNA: 3'- -GGUGG-CUUGC-CGgCGC---AGGUUG---CUCG- -5' |
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13295 | 5' | -56.6 | NC_003409.1 | + | 93355 | 0.67 | 0.856747 |
Target: 5'- gUCAUCGAGCuuauuagcuccGGauuccCCGCGUCCcuccACGAGCc -3' miRNA: 3'- -GGUGGCUUG-----------CC-----GGCGCAGGu---UGCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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