miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13295 5' -56.6 NC_003409.1 + 4816 0.68 0.799017
Target:  5'- -aACCGAGaaGCUaGCGUCCAugG-GCa -3'
miRNA:   3'- ggUGGCUUgcCGG-CGCAGGUugCuCG- -5'
13295 5' -56.6 NC_003409.1 + 8102 0.66 0.885573
Target:  5'- -gACCuGACGGUCGacuGUCCAACGcGGUu -3'
miRNA:   3'- ggUGGcUUGCCGGCg--CAGGUUGC-UCG- -5'
13295 5' -56.6 NC_003409.1 + 11487 0.71 0.645059
Target:  5'- aUCugCGGACGGUaauuugugucUGUGUgCAACGAGUa -3'
miRNA:   3'- -GGugGCUUGCCG----------GCGCAgGUUGCUCG- -5'
13295 5' -56.6 NC_003409.1 + 13886 0.66 0.898705
Target:  5'- -aGCCGAGCgucaaGGCCGCGgCCAAgcuuauuuCGGGg -3'
miRNA:   3'- ggUGGCUUG-----CCGGCGCaGGUU--------GCUCg -5'
13295 5' -56.6 NC_003409.1 + 14046 0.67 0.864262
Target:  5'- aCCACCGAGCuaaGCCGCccgCUGGCGGa- -3'
miRNA:   3'- -GGUGGCUUGc--CGGCGca-GGUUGCUcg -5'
13295 5' -56.6 NC_003409.1 + 14974 0.71 0.624936
Target:  5'- gCGgCGGAgGGCCGCGUacccaaaugCCGAUGGGUu -3'
miRNA:   3'- gGUgGCUUgCCGGCGCA---------GGUUGCUCG- -5'
13295 5' -56.6 NC_003409.1 + 15995 0.68 0.824788
Target:  5'- cCCACaCGGGCucGCCGCG-CC--CGAGCu -3'
miRNA:   3'- -GGUG-GCUUGc-CGGCGCaGGuuGCUCG- -5'
13295 5' -56.6 NC_003409.1 + 16796 0.72 0.584812
Target:  5'- aCUACCuGGCGGCCGCGcggggCCAGCGu-- -3'
miRNA:   3'- -GGUGGcUUGCCGGCGCa----GGUUGCucg -5'
13295 5' -56.6 NC_003409.1 + 22399 0.67 0.849036
Target:  5'- gCCugCGaAGCGGCgcaCGCGUCUucugAugGAGa -3'
miRNA:   3'- -GGugGC-UUGCCG---GCGCAGG----UugCUCg -5'
13295 5' -56.6 NC_003409.1 + 23597 0.7 0.724503
Target:  5'- gCCuCCGAauuugauugACGGCUgggGCGUCCAAUGgaauGGCg -3'
miRNA:   3'- -GGuGGCU---------UGCCGG---CGCAGGUUGC----UCG- -5'
13295 5' -56.6 NC_003409.1 + 26094 0.72 0.574846
Target:  5'- aUACCG-ACGGCCGCGccggCCAACc-GCg -3'
miRNA:   3'- gGUGGCuUGCCGGCGCa---GGUUGcuCG- -5'
13295 5' -56.6 NC_003409.1 + 27675 0.66 0.904937
Target:  5'- uCCAgUCGGuGCGGCCuGCG-CCGGCGucGCu -3'
miRNA:   3'- -GGU-GGCU-UGCCGG-CGCaGGUUGCu-CG- -5'
13295 5' -56.6 NC_003409.1 + 31127 0.66 0.904937
Target:  5'- cCCGCUGAACccacccCCGCcUCCAGCacgcaGAGCa -3'
miRNA:   3'- -GGUGGCUUGcc----GGCGcAGGUUG-----CUCG- -5'
13295 5' -56.6 NC_003409.1 + 31922 0.68 0.799017
Target:  5'- aCCACCcacuCGGCgCGUGUCCGuacACG-GCc -3'
miRNA:   3'- -GGUGGcuu-GCCG-GCGCAGGU---UGCuCG- -5'
13295 5' -56.6 NC_003409.1 + 35925 0.66 0.910943
Target:  5'- aCCGCUcagGGACGGCgGCuuugccuuuaGUCCuAgGGGCg -3'
miRNA:   3'- -GGUGG---CUUGCCGgCG----------CAGGuUgCUCG- -5'
13295 5' -56.6 NC_003409.1 + 36080 0.75 0.440993
Target:  5'- gCCGCCGucccugaGACGGUcaccuacauCGCGUCC-ACGGGCu -3'
miRNA:   3'- -GGUGGC-------UUGCCG---------GCGCAGGuUGCUCG- -5'
13295 5' -56.6 NC_003409.1 + 40260 0.69 0.771935
Target:  5'- aCUACCGGAgugcCGGCUG-G-CCAuaACGAGCg -3'
miRNA:   3'- -GGUGGCUU----GCCGGCgCaGGU--UGCUCG- -5'
13295 5' -56.6 NC_003409.1 + 40693 1.14 0.001381
Target:  5'- gCCACCGAACGGCCGCGUCCAACGAGCa -3'
miRNA:   3'- -GGUGGCUUGCCGGCGCAGGUUGCUCG- -5'
13295 5' -56.6 NC_003409.1 + 41768 0.66 0.885573
Target:  5'- --uCCGGuACGcGCCGaaaGaCCGGCGAGCa -3'
miRNA:   3'- gguGGCU-UGC-CGGCg--CaGGUUGCUCG- -5'
13295 5' -56.6 NC_003409.1 + 43924 0.7 0.724503
Target:  5'- uCCGCCaGAGCGGCCuuGUCaccuuccacagaCGGCaGAGCg -3'
miRNA:   3'- -GGUGG-CUUGCCGGcgCAG------------GUUG-CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.