miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13295 5' -56.6 NC_003409.1 + 109883 0.77 0.335467
Target:  5'- gCCACCGuaccccuACGGCCuuGCcaCCGGCGAGCg -3'
miRNA:   3'- -GGUGGCu------UGCCGG--CGcaGGUUGCUCG- -5'
13295 5' -56.6 NC_003409.1 + 132948 0.67 0.856747
Target:  5'- gCAuCCGGAcCGGCCGCGggaUCC-GCaGGCa -3'
miRNA:   3'- gGU-GGCUU-GCCGGCGC---AGGuUGcUCG- -5'
13295 5' -56.6 NC_003409.1 + 14046 0.67 0.864262
Target:  5'- aCCACCGAGCuaaGCCGCccgCUGGCGGa- -3'
miRNA:   3'- -GGUGGCUUGc--CGGCGca-GGUUGCUcg -5'
13295 5' -56.6 NC_003409.1 + 35925 0.66 0.910943
Target:  5'- aCCGCUcagGGACGGCgGCuuugccuuuaGUCCuAgGGGCg -3'
miRNA:   3'- -GGUGG---CUUGCCGgCG----------CAGGuUgCUCG- -5'
13295 5' -56.6 NC_003409.1 + 111856 0.7 0.714751
Target:  5'- gCCACCGcgggGGCGGCCGUuUCCGucguggAUGAGa -3'
miRNA:   3'- -GGUGGC----UUGCCGGCGcAGGU------UGCUCg -5'
13295 5' -56.6 NC_003409.1 + 119413 0.7 0.724503
Target:  5'- gCCuCCGAauuugauugACGGCUgggGCGUCCAAUGgaauGGCg -3'
miRNA:   3'- -GGuGGCU---------UGCCGG---CGCAGGUUGC----UCG- -5'
13295 5' -56.6 NC_003409.1 + 113795 0.69 0.762655
Target:  5'- aCCACCcuguGCGGCCGaaUCCGccACGGGg -3'
miRNA:   3'- -GGUGGcu--UGCCGGCgcAGGU--UGCUCg -5'
13295 5' -56.6 NC_003409.1 + 62705 0.69 0.771935
Target:  5'- aUACCGuGCaugacgaaGGCCGCGUCCAucccCG-GCg -3'
miRNA:   3'- gGUGGCuUG--------CCGGCGCAGGUu---GCuCG- -5'
13295 5' -56.6 NC_003409.1 + 31922 0.68 0.799017
Target:  5'- aCCACCcacuCGGCgCGUGUCCGuacACG-GCc -3'
miRNA:   3'- -GGUGGcuu-GCCG-GCGCAGGU---UGCuCG- -5'
13295 5' -56.6 NC_003409.1 + 87494 0.67 0.856747
Target:  5'- gCACCGGuuuccCGGCgGgGaagCCAcgcGCGAGCa -3'
miRNA:   3'- gGUGGCUu----GCCGgCgCa--GGU---UGCUCG- -5'
13295 5' -56.6 NC_003409.1 + 4816 0.68 0.799017
Target:  5'- -aACCGAGaaGCUaGCGUCCAugG-GCa -3'
miRNA:   3'- ggUGGCUUgcCGG-CGCAGGUugCuCG- -5'
13295 5' -56.6 NC_003409.1 + 121372 0.68 0.790124
Target:  5'- uCCACCaGGCGGCguUGUGgCC-ACGGGCg -3'
miRNA:   3'- -GGUGGcUUGCCG--GCGCaGGuUGCUCG- -5'
13295 5' -56.6 NC_003409.1 + 112770 0.72 0.598817
Target:  5'- aCCGCCGAGCGcaaCGCGcCCGcuuggcaagggccgcGCGGGCc -3'
miRNA:   3'- -GGUGGCUUGCcg-GCGCaGGU---------------UGCUCG- -5'
13295 5' -56.6 NC_003409.1 + 79421 0.68 0.816356
Target:  5'- gCGCCGAGaCGaucGCCGaCGUCCuuACGGGg -3'
miRNA:   3'- gGUGGCUU-GC---CGGC-GCAGGu-UGCUCg -5'
13295 5' -56.6 NC_003409.1 + 108991 0.72 0.614879
Target:  5'- cCCACgCGccCGGCCuGCGUCCcAGCcGGCg -3'
miRNA:   3'- -GGUG-GCuuGCCGG-CGCAGG-UUGcUCG- -5'
13295 5' -56.6 NC_003409.1 + 75423 0.69 0.780184
Target:  5'- cCCACgCGAaagcaaggcagauACGGCCGCGUgUCAuCGAaaGCa -3'
miRNA:   3'- -GGUG-GCU-------------UGCCGGCGCA-GGUuGCU--CG- -5'
13295 5' -56.6 NC_003409.1 + 79286 0.68 0.828113
Target:  5'- gUCACCGAgGCGcuuguaagcgugguuGCCGCGUCCAAaaaGGUu -3'
miRNA:   3'- -GGUGGCU-UGC---------------CGGCGCAGGUUgc-UCG- -5'
13295 5' -56.6 NC_003409.1 + 72758 0.67 0.856747
Target:  5'- aCCAaaGGcGCGGCCGgGUaCAACGuGCc -3'
miRNA:   3'- -GGUggCU-UGCCGGCgCAgGUUGCuCG- -5'
13295 5' -56.6 NC_003409.1 + 107522 0.7 0.69901
Target:  5'- aCGCCGugguucgccccuuccGGCGGCCGUggGUCCAGCGcuCu -3'
miRNA:   3'- gGUGGC---------------UUGCCGGCG--CAGGUUGCucG- -5'
13295 5' -56.6 NC_003409.1 + 104214 0.69 0.734178
Target:  5'- cUCAUCGGACaGGaCGCGgCCAuccGCGAGCc -3'
miRNA:   3'- -GGUGGCUUG-CCgGCGCaGGU---UGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.