miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13295 5' -56.6 NC_003409.1 + 40693 1.14 0.001381
Target:  5'- gCCACCGAACGGCCGCGUCCAACGAGCa -3'
miRNA:   3'- -GGUGGCUUGCCGGCGCAGGUUGCUCG- -5'
13295 5' -56.6 NC_003409.1 + 104380 0.78 0.286417
Target:  5'- cUCG-CGGAUGGCCGCGUCCuguccGAUGAGCc -3'
miRNA:   3'- -GGUgGCUUGCCGGCGCAGG-----UUGCUCG- -5'
13295 5' -56.6 NC_003409.1 + 109883 0.77 0.335467
Target:  5'- gCCACCGuaccccuACGGCCuuGCcaCCGGCGAGCg -3'
miRNA:   3'- -GGUGGCu------UGCCGG--CGcaGGUUGCUCG- -5'
13295 5' -56.6 NC_003409.1 + 113922 0.76 0.366138
Target:  5'- cCCACC-AACGGCCGCGaCgcGCGGGCc -3'
miRNA:   3'- -GGUGGcUUGCCGGCGCaGguUGCUCG- -5'
13295 5' -56.6 NC_003409.1 + 36080 0.75 0.440993
Target:  5'- gCCGCCGucccugaGACGGUcaccuacauCGCGUCC-ACGGGCu -3'
miRNA:   3'- -GGUGGC-------UUGCCG---------GCGCAGGuUGCUCG- -5'
13295 5' -56.6 NC_003409.1 + 112918 0.74 0.459889
Target:  5'- gCGCuCGGGCGGuuGUGUgCAugGAGUg -3'
miRNA:   3'- gGUG-GCUUGCCggCGCAgGUugCUCG- -5'
13295 5' -56.6 NC_003409.1 + 26094 0.72 0.574846
Target:  5'- aUACCG-ACGGCCGCGccggCCAACc-GCg -3'
miRNA:   3'- gGUGGCuUGCCGGCGCa---GGUUGcuCG- -5'
13295 5' -56.6 NC_003409.1 + 51992 0.72 0.584812
Target:  5'- uCCACgGGugaGuGCCGgGUCCGGCGuAGCa -3'
miRNA:   3'- -GGUGgCUug-C-CGGCgCAGGUUGC-UCG- -5'
13295 5' -56.6 NC_003409.1 + 16796 0.72 0.584812
Target:  5'- aCUACCuGGCGGCCGCGcggggCCAGCGu-- -3'
miRNA:   3'- -GGUGGcUUGCCGGCGCa----GGUUGCucg -5'
13295 5' -56.6 NC_003409.1 + 112770 0.72 0.598817
Target:  5'- aCCGCCGAGCGcaaCGCGcCCGcuuggcaagggccgcGCGGGCc -3'
miRNA:   3'- -GGUGGCUUGCcg-GCGCaGGU---------------UGCUCG- -5'
13295 5' -56.6 NC_003409.1 + 131400 0.72 0.604835
Target:  5'- gCGCCGugUGGCCGCGUuggugcugCCuGgGAGCa -3'
miRNA:   3'- gGUGGCuuGCCGGCGCA--------GGuUgCUCG- -5'
13295 5' -56.6 NC_003409.1 + 108991 0.72 0.614879
Target:  5'- cCCACgCGccCGGCCuGCGUCCcAGCcGGCg -3'
miRNA:   3'- -GGUG-GCuuGCCGG-CGCAGG-UUGcUCG- -5'
13295 5' -56.6 NC_003409.1 + 14974 0.71 0.624936
Target:  5'- gCGgCGGAgGGCCGCGUacccaaaugCCGAUGGGUu -3'
miRNA:   3'- gGUgGCUUgCCGGCGCA---------GGUUGCUCG- -5'
13295 5' -56.6 NC_003409.1 + 11487 0.71 0.645059
Target:  5'- aUCugCGGACGGUaauuugugucUGUGUgCAACGAGUa -3'
miRNA:   3'- -GGugGCUUGCCG----------GCGCAgGUUGCUCG- -5'
13295 5' -56.6 NC_003409.1 + 106138 0.71 0.645059
Target:  5'- aCGCCgucuuGAAUGGUuugUGCGUCCuGGCGGGCa -3'
miRNA:   3'- gGUGG-----CUUGCCG---GCGCAGG-UUGCUCG- -5'
13295 5' -56.6 NC_003409.1 + 77266 0.7 0.695051
Target:  5'- gUACCuGAcAUGGCCGCGcCCAG-GGGCa -3'
miRNA:   3'- gGUGG-CU-UGCCGGCGCaGGUUgCUCG- -5'
13295 5' -56.6 NC_003409.1 + 107522 0.7 0.69901
Target:  5'- aCGCCGugguucgccccuuccGGCGGCCGUggGUCCAGCGcuCu -3'
miRNA:   3'- gGUGGC---------------UUGCCGGCG--CAGGUUGCucG- -5'
13295 5' -56.6 NC_003409.1 + 111856 0.7 0.714751
Target:  5'- gCCACCGcgggGGCGGCCGUuUCCGucguggAUGAGa -3'
miRNA:   3'- -GGUGGC----UUGCCGGCGcAGGU------UGCUCg -5'
13295 5' -56.6 NC_003409.1 + 116248 0.7 0.724503
Target:  5'- gCAUCGAggagcuguccgGCGGCCGCGgaugCCc-UGAGCu -3'
miRNA:   3'- gGUGGCU-----------UGCCGGCGCa---GGuuGCUCG- -5'
13295 5' -56.6 NC_003409.1 + 67898 0.7 0.724503
Target:  5'- uCCAacucuCCGGACgugaacaaugaGGCCGCGUuuaCCGACGcGCg -3'
miRNA:   3'- -GGU-----GGCUUG-----------CCGGCGCA---GGUUGCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.