Results 21 - 40 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13295 | 5' | -56.6 | NC_003409.1 | + | 67898 | 0.7 | 0.724503 |
Target: 5'- uCCAacucuCCGGACgugaacaaugaGGCCGCGUuuaCCGACGcGCg -3' miRNA: 3'- -GGU-----GGCUUG-----------CCGGCGCA---GGUUGCuCG- -5' |
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13295 | 5' | -56.6 | NC_003409.1 | + | 116248 | 0.7 | 0.724503 |
Target: 5'- gCAUCGAggagcuguccgGCGGCCGCGgaugCCc-UGAGCu -3' miRNA: 3'- gGUGGCU-----------UGCCGGCGCa---GGuuGCUCG- -5' |
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13295 | 5' | -56.6 | NC_003409.1 | + | 23597 | 0.7 | 0.724503 |
Target: 5'- gCCuCCGAauuugauugACGGCUgggGCGUCCAAUGgaauGGCg -3' miRNA: 3'- -GGuGGCU---------UGCCGG---CGCAGGUUGC----UCG- -5' |
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13295 | 5' | -56.6 | NC_003409.1 | + | 104214 | 0.69 | 0.734178 |
Target: 5'- cUCAUCGGACaGGaCGCGgCCAuccGCGAGCc -3' miRNA: 3'- -GGUGGCUUG-CCgGCGCaGGU---UGCUCG- -5' |
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13295 | 5' | -56.6 | NC_003409.1 | + | 113795 | 0.69 | 0.762655 |
Target: 5'- aCCACCcuguGCGGCCGaaUCCGccACGGGg -3' miRNA: 3'- -GGUGGcu--UGCCGGCgcAGGU--UGCUCg -5' |
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13295 | 5' | -56.6 | NC_003409.1 | + | 40260 | 0.69 | 0.771935 |
Target: 5'- aCUACCGGAgugcCGGCUG-G-CCAuaACGAGCg -3' miRNA: 3'- -GGUGGCUU----GCCGGCgCaGGU--UGCUCG- -5' |
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13295 | 5' | -56.6 | NC_003409.1 | + | 62705 | 0.69 | 0.771935 |
Target: 5'- aUACCGuGCaugacgaaGGCCGCGUCCAucccCG-GCg -3' miRNA: 3'- gGUGGCuUG--------CCGGCGCAGGUu---GCuCG- -5' |
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13295 | 5' | -56.6 | NC_003409.1 | + | 75423 | 0.69 | 0.780184 |
Target: 5'- cCCACgCGAaagcaaggcagauACGGCCGCGUgUCAuCGAaaGCa -3' miRNA: 3'- -GGUG-GCU-------------UGCCGGCGCA-GGUuGCU--CG- -5' |
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13295 | 5' | -56.6 | NC_003409.1 | + | 113811 | 0.69 | 0.781094 |
Target: 5'- -gGCCGuGCGGUCGCG-CUggUGAGa -3' miRNA: 3'- ggUGGCuUGCCGGCGCaGGuuGCUCg -5' |
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13295 | 5' | -56.6 | NC_003409.1 | + | 44970 | 0.69 | 0.781094 |
Target: 5'- cCCACCGuc---UCGUGUCCcGCGAGCu -3' miRNA: 3'- -GGUGGCuugccGGCGCAGGuUGCUCG- -5' |
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13295 | 5' | -56.6 | NC_003409.1 | + | 121372 | 0.68 | 0.790124 |
Target: 5'- uCCACCaGGCGGCguUGUGgCC-ACGGGCg -3' miRNA: 3'- -GGUGGcUUGCCG--GCGCaGGuUGCUCG- -5' |
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13295 | 5' | -56.6 | NC_003409.1 | + | 31922 | 0.68 | 0.799017 |
Target: 5'- aCCACCcacuCGGCgCGUGUCCGuacACG-GCc -3' miRNA: 3'- -GGUGGcuu-GCCG-GCGCAGGU---UGCuCG- -5' |
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13295 | 5' | -56.6 | NC_003409.1 | + | 69813 | 0.68 | 0.799017 |
Target: 5'- uCCACaGGACGGCaaauaGCGcaaagauccCCAugGGGCa -3' miRNA: 3'- -GGUGgCUUGCCGg----CGCa--------GGUugCUCG- -5' |
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13295 | 5' | -56.6 | NC_003409.1 | + | 4816 | 0.68 | 0.799017 |
Target: 5'- -aACCGAGaaGCUaGCGUCCAugG-GCa -3' miRNA: 3'- ggUGGCUUgcCGG-CGCAGGUugCuCG- -5' |
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13295 | 5' | -56.6 | NC_003409.1 | + | 79421 | 0.68 | 0.816356 |
Target: 5'- gCGCCGAGaCGaucGCCGaCGUCCuuACGGGg -3' miRNA: 3'- gGUGGCUU-GC---CGGC-GCAGGu-UGCUCg -5' |
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13295 | 5' | -56.6 | NC_003409.1 | + | 108611 | 0.68 | 0.824788 |
Target: 5'- gUCGCCGuGCGuaGCCGCGgccUCUAGCucgaGAGCg -3' miRNA: 3'- -GGUGGCuUGC--CGGCGC---AGGUUG----CUCG- -5' |
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13295 | 5' | -56.6 | NC_003409.1 | + | 15995 | 0.68 | 0.824788 |
Target: 5'- cCCACaCGGGCucGCCGCG-CC--CGAGCu -3' miRNA: 3'- -GGUG-GCUUGc-CGGCGCaGGuuGCUCG- -5' |
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13295 | 5' | -56.6 | NC_003409.1 | + | 79286 | 0.68 | 0.828113 |
Target: 5'- gUCACCGAgGCGcuuguaagcgugguuGCCGCGUCCAAaaaGGUu -3' miRNA: 3'- -GGUGGCU-UGC---------------CGGCGCAGGUUgc-UCG- -5' |
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13295 | 5' | -56.6 | NC_003409.1 | + | 107486 | 0.67 | 0.849036 |
Target: 5'- aCGCuUGGACGGggGCGUCC-GCGGGUa -3' miRNA: 3'- gGUG-GCUUGCCggCGCAGGuUGCUCG- -5' |
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13295 | 5' | -56.6 | NC_003409.1 | + | 58836 | 0.67 | 0.849036 |
Target: 5'- aCGUCGAGCGGuuCCcCGUCCAcgucuACGGGCu -3' miRNA: 3'- gGUGGCUUGCC--GGcGCAGGU-----UGCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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