miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13295 5' -56.6 NC_003409.1 + 35925 0.66 0.910943
Target:  5'- aCCGCUcagGGACGGCgGCuuugccuuuaGUCCuAgGGGCg -3'
miRNA:   3'- -GGUGG---CUUGCCGgCG----------CAGGuUgCUCG- -5'
13295 5' -56.6 NC_003409.1 + 132948 0.67 0.856747
Target:  5'- gCAuCCGGAcCGGCCGCGggaUCC-GCaGGCa -3'
miRNA:   3'- gGU-GGCUU-GCCGGCGC---AGGuUGcUCG- -5'
13295 5' -56.6 NC_003409.1 + 13886 0.66 0.898705
Target:  5'- -aGCCGAGCgucaaGGCCGCGgCCAAgcuuauuuCGGGg -3'
miRNA:   3'- ggUGGCUUG-----CCGGCGCaGGUU--------GCUCg -5'
13295 5' -56.6 NC_003409.1 + 108991 0.72 0.614879
Target:  5'- cCCACgCGccCGGCCuGCGUCCcAGCcGGCg -3'
miRNA:   3'- -GGUG-GCuuGCCGG-CGCAGG-UUGcUCG- -5'
13295 5' -56.6 NC_003409.1 + 27675 0.66 0.904937
Target:  5'- uCCAgUCGGuGCGGCCuGCG-CCGGCGucGCu -3'
miRNA:   3'- -GGU-GGCU-UGCCGG-CGCaGGUUGCu-CG- -5'
13295 5' -56.6 NC_003409.1 + 112770 0.72 0.598817
Target:  5'- aCCGCCGAGCGcaaCGCGcCCGcuuggcaagggccgcGCGGGCc -3'
miRNA:   3'- -GGUGGCUUGCcg-GCGCaGGU---------------UGCUCG- -5'
13295 5' -56.6 NC_003409.1 + 109883 0.77 0.335467
Target:  5'- gCCACCGuaccccuACGGCCuuGCcaCCGGCGAGCg -3'
miRNA:   3'- -GGUGGCu------UGCCGG--CGcaGGUUGCUCG- -5'
13295 5' -56.6 NC_003409.1 + 72758 0.67 0.856747
Target:  5'- aCCAaaGGcGCGGCCGgGUaCAACGuGCc -3'
miRNA:   3'- -GGUggCU-UGCCGGCgCAgGUUGCuCG- -5'
13295 5' -56.6 NC_003409.1 + 41768 0.66 0.885573
Target:  5'- --uCCGGuACGcGCCGaaaGaCCGGCGAGCa -3'
miRNA:   3'- gguGGCU-UGC-CGGCg--CaGGUUGCUCG- -5'
13295 5' -56.6 NC_003409.1 + 77266 0.7 0.695051
Target:  5'- gUACCuGAcAUGGCCGCGcCCAG-GGGCa -3'
miRNA:   3'- gGUGG-CU-UGCCGGCGCaGGUUgCUCG- -5'
13295 5' -56.6 NC_003409.1 + 116248 0.7 0.724503
Target:  5'- gCAUCGAggagcuguccgGCGGCCGCGgaugCCc-UGAGCu -3'
miRNA:   3'- gGUGGCU-----------UGCCGGCGCa---GGuuGCUCG- -5'
13295 5' -56.6 NC_003409.1 + 83064 0.67 0.871575
Target:  5'- gCCuCCG-GCGGCUGCGguuucUCGACG-GCa -3'
miRNA:   3'- -GGuGGCuUGCCGGCGCa----GGUUGCuCG- -5'
13295 5' -56.6 NC_003409.1 + 113459 0.67 0.871575
Target:  5'- gCCGCCGAccaugcuaggGCGauaCCGCG-CCAcguAUGGGCa -3'
miRNA:   3'- -GGUGGCU----------UGCc--GGCGCaGGU---UGCUCG- -5'
13295 5' -56.6 NC_003409.1 + 74516 0.67 0.871575
Target:  5'- aCCGCagaGGCGGUggCGUGUCCAGCuGGUa -3'
miRNA:   3'- -GGUGgc-UUGCCG--GCGCAGGUUGcUCG- -5'
13295 5' -56.6 NC_003409.1 + 49674 0.66 0.87868
Target:  5'- gCCAgCCaGACGGUgGUGUCCAACa--- -3'
miRNA:   3'- -GGU-GGcUUGCCGgCGCAGGUUGcucg -5'
13295 5' -56.6 NC_003409.1 + 113811 0.69 0.781094
Target:  5'- -gGCCGuGCGGUCGCG-CUggUGAGa -3'
miRNA:   3'- ggUGGCuUGCCGGCGCaGGuuGCUCg -5'
13295 5' -56.6 NC_003409.1 + 40260 0.69 0.771935
Target:  5'- aCUACCGGAgugcCGGCUG-G-CCAuaACGAGCg -3'
miRNA:   3'- -GGUGGCUU----GCCGGCgCaGGU--UGCUCG- -5'
13295 5' -56.6 NC_003409.1 + 67898 0.7 0.724503
Target:  5'- uCCAacucuCCGGACgugaacaaugaGGCCGCGUuuaCCGACGcGCg -3'
miRNA:   3'- -GGU-----GGCUUG-----------CCGGCGCA---GGUUGCuCG- -5'
13295 5' -56.6 NC_003409.1 + 23597 0.7 0.724503
Target:  5'- gCCuCCGAauuugauugACGGCUgggGCGUCCAAUGgaauGGCg -3'
miRNA:   3'- -GGuGGCU---------UGCCGG---CGCAGGUUGC----UCG- -5'
13295 5' -56.6 NC_003409.1 + 43924 0.7 0.724503
Target:  5'- uCCGCCaGAGCGGCCuuGUCaccuuccacagaCGGCaGAGCg -3'
miRNA:   3'- -GGUGG-CUUGCCGGcgCAG------------GUUG-CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.