miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13295 5' -56.6 NC_003409.1 + 15995 0.68 0.824788
Target:  5'- cCCACaCGGGCucGCCGCG-CC--CGAGCu -3'
miRNA:   3'- -GGUG-GCUUGc-CGGCGCaGGuuGCUCG- -5'
13295 5' -56.6 NC_003409.1 + 74516 0.67 0.871575
Target:  5'- aCCGCagaGGCGGUggCGUGUCCAGCuGGUa -3'
miRNA:   3'- -GGUGgc-UUGCCG--GCGCAGGUUGcUCG- -5'
13295 5' -56.6 NC_003409.1 + 113459 0.67 0.871575
Target:  5'- gCCGCCGAccaugcuaggGCGauaCCGCG-CCAcguAUGGGCa -3'
miRNA:   3'- -GGUGGCU----------UGCc--GGCGCaGGU---UGCUCG- -5'
13295 5' -56.6 NC_003409.1 + 83064 0.67 0.871575
Target:  5'- gCCuCCG-GCGGCUGCGguuucUCGACG-GCa -3'
miRNA:   3'- -GGuGGCuUGCCGGCGCa----GGUUGCuCG- -5'
13295 5' -56.6 NC_003409.1 + 133114 0.67 0.864262
Target:  5'- gCCugCGGaucccGCGGCCG-GUCCGgaugccgugaagGCG-GCg -3'
miRNA:   3'- -GGugGCU-----UGCCGGCgCAGGU------------UGCuCG- -5'
13295 5' -56.6 NC_003409.1 + 93355 0.67 0.856747
Target:  5'- gUCAUCGAGCuuauuagcuccGGauuccCCGCGUCCcuccACGAGCc -3'
miRNA:   3'- -GGUGGCUUG-----------CC-----GGCGCAGGu---UGCUCG- -5'
13295 5' -56.6 NC_003409.1 + 22399 0.67 0.849036
Target:  5'- gCCugCGaAGCGGCgcaCGCGUCUucugAugGAGa -3'
miRNA:   3'- -GGugGC-UUGCCG---GCGCAGG----UugCUCg -5'
13295 5' -56.6 NC_003409.1 + 58836 0.67 0.849036
Target:  5'- aCGUCGAGCGGuuCCcCGUCCAcgucuACGGGCu -3'
miRNA:   3'- gGUGGCUUGCC--GGcGCAGGU-----UGCUCG- -5'
13295 5' -56.6 NC_003409.1 + 107486 0.67 0.849036
Target:  5'- aCGCuUGGACGGggGCGUCC-GCGGGUa -3'
miRNA:   3'- gGUG-GCUUGCCggCGCAGGuUGCUCG- -5'
13295 5' -56.6 NC_003409.1 + 49674 0.66 0.87868
Target:  5'- gCCAgCCaGACGGUgGUGUCCAACa--- -3'
miRNA:   3'- -GGU-GGcUUGCCGgCGCAGGUUGcucg -5'
13295 5' -56.6 NC_003409.1 + 114240 0.66 0.87868
Target:  5'- -uGCCGAccaaGCGacGCCGUGUCCcaguuUGGGCa -3'
miRNA:   3'- ggUGGCU----UGC--CGGCGCAGGuu---GCUCG- -5'
13295 5' -56.6 NC_003409.1 + 44063 0.66 0.87868
Target:  5'- gUACUGGAUGcGCCG-GUUCAGUGGGCa -3'
miRNA:   3'- gGUGGCUUGC-CGGCgCAGGUUGCUCG- -5'
13295 5' -56.6 NC_003409.1 + 104940 0.66 0.904937
Target:  5'- uCCACCGuaucccGCuGCCuGC-UCUGGCGGGCg -3'
miRNA:   3'- -GGUGGCu-----UGcCGG-CGcAGGUUGCUCG- -5'
13295 5' -56.6 NC_003409.1 + 110013 0.66 0.901225
Target:  5'- gCGCCGGGCGccaccgccucccgccGCgGCGUCU--UGGGCg -3'
miRNA:   3'- gGUGGCUUGC---------------CGgCGCAGGuuGCUCG- -5'
13295 5' -56.6 NC_003409.1 + 81275 0.66 0.898705
Target:  5'- gCCACC-AugGGCUcCGacCCAACGAcGCa -3'
miRNA:   3'- -GGUGGcUugCCGGcGCa-GGUUGCU-CG- -5'
13295 5' -56.6 NC_003409.1 + 109104 0.66 0.898705
Target:  5'- gCCAcugucCCGGAgcCGGCUGCGUCUGGcCGAuGUg -3'
miRNA:   3'- -GGU-----GGCUU--GCCGGCGCAGGUU-GCU-CG- -5'
13295 5' -56.6 NC_003409.1 + 95226 0.66 0.89225
Target:  5'- gCCACCGcAACGGCgGUGUaucaGGCGccGCc -3'
miRNA:   3'- -GGUGGC-UUGCCGgCGCAgg--UUGCu-CG- -5'
13295 5' -56.6 NC_003409.1 + 41768 0.66 0.885573
Target:  5'- --uCCGGuACGcGCCGaaaGaCCGGCGAGCa -3'
miRNA:   3'- gguGGCU-UGC-CGGCg--CaGGUUGCUCG- -5'
13295 5' -56.6 NC_003409.1 + 67620 0.66 0.885573
Target:  5'- uCCGCCguGAGCGuGaUCGUGUCUccguCGAGCa -3'
miRNA:   3'- -GGUGG--CUUGC-C-GGCGCAGGuu--GCUCG- -5'
13295 5' -56.6 NC_003409.1 + 131356 0.66 0.885573
Target:  5'- aCGCgCucAUGGCCGCGUUgCAgaacACGGGCu -3'
miRNA:   3'- gGUG-GcuUGCCGGCGCAG-GU----UGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.