miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13295 5' -56.6 NC_003409.1 + 133114 0.67 0.864262
Target:  5'- gCCugCGGaucccGCGGCCG-GUCCGgaugccgugaagGCG-GCg -3'
miRNA:   3'- -GGugGCU-----UGCCGGCgCAGGU------------UGCuCG- -5'
13295 5' -56.6 NC_003409.1 + 133059 0.66 0.898705
Target:  5'- aCCACCGG--GGCCGgGUCauGCGAu- -3'
miRNA:   3'- -GGUGGCUugCCGGCgCAGguUGCUcg -5'
13295 5' -56.6 NC_003409.1 + 132948 0.67 0.856747
Target:  5'- gCAuCCGGAcCGGCCGCGggaUCC-GCaGGCa -3'
miRNA:   3'- gGU-GGCUU-GCCGGCGC---AGGuUGcUCG- -5'
13295 5' -56.6 NC_003409.1 + 131400 0.72 0.604835
Target:  5'- gCGCCGugUGGCCGCGUuggugcugCCuGgGAGCa -3'
miRNA:   3'- gGUGGCuuGCCGGCGCA--------GGuUgCUCG- -5'
13295 5' -56.6 NC_003409.1 + 131356 0.66 0.885573
Target:  5'- aCGCgCucAUGGCCGCGUUgCAgaacACGGGCu -3'
miRNA:   3'- gGUG-GcuUGCCGGCGCAG-GU----UGCUCG- -5'
13295 5' -56.6 NC_003409.1 + 127386 0.66 0.885573
Target:  5'- gCCACCaGAUGGCaCGCGccgCCAGCa--- -3'
miRNA:   3'- -GGUGGcUUGCCG-GCGCa--GGUUGcucg -5'
13295 5' -56.6 NC_003409.1 + 121372 0.68 0.790124
Target:  5'- uCCACCaGGCGGCguUGUGgCC-ACGGGCg -3'
miRNA:   3'- -GGUGGcUUGCCG--GCGCaGGuUGCUCG- -5'
13295 5' -56.6 NC_003409.1 + 119413 0.7 0.724503
Target:  5'- gCCuCCGAauuugauugACGGCUgggGCGUCCAAUGgaauGGCg -3'
miRNA:   3'- -GGuGGCU---------UGCCGG---CGCAGGUUGC----UCG- -5'
13295 5' -56.6 NC_003409.1 + 116407 0.66 0.898705
Target:  5'- cCCGCCu-GCGGUCG-GUCCcGCccgGGGCg -3'
miRNA:   3'- -GGUGGcuUGCCGGCgCAGGuUG---CUCG- -5'
13295 5' -56.6 NC_003409.1 + 116248 0.7 0.724503
Target:  5'- gCAUCGAggagcuguccgGCGGCCGCGgaugCCc-UGAGCu -3'
miRNA:   3'- gGUGGCU-----------UGCCGGCGCa---GGuuGCUCG- -5'
13295 5' -56.6 NC_003409.1 + 114240 0.66 0.87868
Target:  5'- -uGCCGAccaaGCGacGCCGUGUCCcaguuUGGGCa -3'
miRNA:   3'- ggUGGCU----UGC--CGGCGCAGGuu---GCUCG- -5'
13295 5' -56.6 NC_003409.1 + 113922 0.76 0.366138
Target:  5'- cCCACC-AACGGCCGCGaCgcGCGGGCc -3'
miRNA:   3'- -GGUGGcUUGCCGGCGCaGguUGCUCG- -5'
13295 5' -56.6 NC_003409.1 + 113811 0.69 0.781094
Target:  5'- -gGCCGuGCGGUCGCG-CUggUGAGa -3'
miRNA:   3'- ggUGGCuUGCCGGCGCaGGuuGCUCg -5'
13295 5' -56.6 NC_003409.1 + 113795 0.69 0.762655
Target:  5'- aCCACCcuguGCGGCCGaaUCCGccACGGGg -3'
miRNA:   3'- -GGUGGcu--UGCCGGCgcAGGU--UGCUCg -5'
13295 5' -56.6 NC_003409.1 + 113459 0.67 0.871575
Target:  5'- gCCGCCGAccaugcuaggGCGauaCCGCG-CCAcguAUGGGCa -3'
miRNA:   3'- -GGUGGCU----------UGCc--GGCGCaGGU---UGCUCG- -5'
13295 5' -56.6 NC_003409.1 + 112918 0.74 0.459889
Target:  5'- gCGCuCGGGCGGuuGUGUgCAugGAGUg -3'
miRNA:   3'- gGUG-GCUUGCCggCGCAgGUugCUCG- -5'
13295 5' -56.6 NC_003409.1 + 112770 0.72 0.598817
Target:  5'- aCCGCCGAGCGcaaCGCGcCCGcuuggcaagggccgcGCGGGCc -3'
miRNA:   3'- -GGUGGCUUGCcg-GCGCaGGU---------------UGCUCG- -5'
13295 5' -56.6 NC_003409.1 + 111856 0.7 0.714751
Target:  5'- gCCACCGcgggGGCGGCCGUuUCCGucguggAUGAGa -3'
miRNA:   3'- -GGUGGC----UUGCCGGCGcAGGU------UGCUCg -5'
13295 5' -56.6 NC_003409.1 + 110013 0.66 0.901225
Target:  5'- gCGCCGGGCGccaccgccucccgccGCgGCGUCU--UGGGCg -3'
miRNA:   3'- gGUGGCUUGC---------------CGgCGCAGGuuGCUCG- -5'
13295 5' -56.6 NC_003409.1 + 109883 0.77 0.335467
Target:  5'- gCCACCGuaccccuACGGCCuuGCcaCCGGCGAGCg -3'
miRNA:   3'- -GGUGGCu------UGCCGG--CGcaGGUUGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.