miRNA display CGI


Results 1 - 20 of 39 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13296 3' -53.4 NC_003409.1 + 3418 0.71 0.726594
Target:  5'- ----gAGGUACCCGCaGGGACcaguggggGCCGCa -3'
miRNA:   3'- aaaaaUCCGUGGGUG-CUCUG--------UGGCGc -5'
13296 3' -53.4 NC_003409.1 + 5755 0.66 0.945088
Target:  5'- --gUUAGGUguuCCCcCGAGACACCu-- -3'
miRNA:   3'- aaaAAUCCGu--GGGuGCUCUGUGGcgc -5'
13296 3' -53.4 NC_003409.1 + 8918 0.66 0.940377
Target:  5'- ----aAGGUgucACCCcuCGAGuGCGCCGCGc -3'
miRNA:   3'- aaaaaUCCG---UGGGu-GCUC-UGUGGCGC- -5'
13296 3' -53.4 NC_003409.1 + 14972 0.72 0.685206
Target:  5'- ----gAGGCACCCcuaccgucgcGCGAGACGCUGg- -3'
miRNA:   3'- aaaaaUCCGUGGG----------UGCUCUGUGGCgc -5'
13296 3' -53.4 NC_003409.1 + 22405 0.66 0.957727
Target:  5'- ----cGGGuCGCCUGCGAagcGGCGCaCGCGu -3'
miRNA:   3'- aaaaaUCC-GUGGGUGCU---CUGUG-GCGC- -5'
13296 3' -53.4 NC_003409.1 + 22587 0.67 0.913009
Target:  5'- ----cAGGCGaCCAgGGGuCGCCGCGc -3'
miRNA:   3'- aaaaaUCCGUgGGUgCUCuGUGGCGC- -5'
13296 3' -53.4 NC_003409.1 + 32111 0.68 0.886564
Target:  5'- ----gGGGCGCCgACGcggcacAGugGCCGUGu -3'
miRNA:   3'- aaaaaUCCGUGGgUGC------UCugUGGCGC- -5'
13296 3' -53.4 NC_003409.1 + 32779 0.67 0.930196
Target:  5'- ----gGGGuCACCCACGAcguucGCAUCGCc -3'
miRNA:   3'- aaaaaUCC-GUGGGUGCUc----UGUGGCGc -5'
13296 3' -53.4 NC_003409.1 + 33942 0.68 0.871884
Target:  5'- ----gAGGCGCCaGCGAGGCG-CGCu -3'
miRNA:   3'- aaaaaUCCGUGGgUGCUCUGUgGCGc -5'
13296 3' -53.4 NC_003409.1 + 38280 0.69 0.848158
Target:  5'- -----uGGCGCCCGUGAuGGCGCCGUc -3'
miRNA:   3'- aaaaauCCGUGGGUGCU-CUGUGGCGc -5'
13296 3' -53.4 NC_003409.1 + 38284 0.67 0.913009
Target:  5'- ---gUGGGCAUgcacagaCGCGAGAUGCgGCGg -3'
miRNA:   3'- aaaaAUCCGUGg------GUGCUCUGUGgCGC- -5'
13296 3' -53.4 NC_003409.1 + 41821 1.06 0.006312
Target:  5'- cUUUUUAGGCACCCACGAGACACCGCGu -3'
miRNA:   3'- -AAAAAUCCGUGGGUGCUCUGUGGCGC- -5'
13296 3' -53.4 NC_003409.1 + 44356 0.66 0.945088
Target:  5'- uUUUUUGuGCACCCcuguccuggaGCGAGAggaucgUACCGCGc -3'
miRNA:   3'- -AAAAAUcCGUGGG----------UGCUCU------GUGGCGC- -5'
13296 3' -53.4 NC_003409.1 + 53136 0.67 0.930196
Target:  5'- ------cGCGCCC-CGGGACggGCCGCa -3'
miRNA:   3'- aaaaaucCGUGGGuGCUCUG--UGGCGc -5'
13296 3' -53.4 NC_003409.1 + 70040 0.67 0.913009
Target:  5'- ----gGGGCuCCCugGGGAgCACCGa- -3'
miRNA:   3'- aaaaaUCCGuGGGugCUCU-GUGGCgc -5'
13296 3' -53.4 NC_003409.1 + 86285 0.66 0.948235
Target:  5'- -----uGGCAaccacagccgcaauCCCAC-AGACACCGCu -3'
miRNA:   3'- aaaaauCCGU--------------GGGUGcUCUGUGGCGc -5'
13296 3' -53.4 NC_003409.1 + 87449 0.68 0.879341
Target:  5'- -----uGGCACCCACcAGuuggucACGCCGUGg -3'
miRNA:   3'- aaaaauCCGUGGGUGcUC------UGUGGCGC- -5'
13296 3' -53.4 NC_003409.1 + 87627 0.66 0.949547
Target:  5'- ----aAGGCGCUUGCGGGGCAUCa-- -3'
miRNA:   3'- aaaaaUCCGUGGGUGCUCUGUGGcgc -5'
13296 3' -53.4 NC_003409.1 + 104698 0.67 0.935414
Target:  5'- ------cGCGCCCGCGcAGACcUCGCGu -3'
miRNA:   3'- aaaaaucCGUGGGUGC-UCUGuGGCGC- -5'
13296 3' -53.4 NC_003409.1 + 108203 0.72 0.695648
Target:  5'- ----cAGGCACCCAgugcgaucuCGGGGCGcCCGCu -3'
miRNA:   3'- aaaaaUCCGUGGGU---------GCUCUGU-GGCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.