miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13296 3' -53.4 NC_003409.1 + 14972 0.72 0.685206
Target:  5'- ----gAGGCACCCcuaccgucgcGCGAGACGCUGg- -3'
miRNA:   3'- aaaaaUCCGUGGG----------UGCUCUGUGGCgc -5'
13296 3' -53.4 NC_003409.1 + 118421 0.67 0.935414
Target:  5'- -----cGGguUCCugGGGuGCGCCGCGc -3'
miRNA:   3'- aaaaauCCguGGGugCUC-UGUGGCGC- -5'
13296 3' -53.4 NC_003409.1 + 118444 0.67 0.935414
Target:  5'- -----cGGguUCCugGGGuGCGCCGCGc -3'
miRNA:   3'- aaaaauCCguGGGugCUC-UGUGGCGC- -5'
13296 3' -53.4 NC_003409.1 + 44356 0.66 0.945088
Target:  5'- uUUUUUGuGCACCCcuguccuggaGCGAGAggaucgUACCGCGc -3'
miRNA:   3'- -AAAAAUcCGUGGG----------UGCUCU------GUGGCGC- -5'
13296 3' -53.4 NC_003409.1 + 33942 0.68 0.871884
Target:  5'- ----gAGGCGCCaGCGAGGCG-CGCu -3'
miRNA:   3'- aaaaaUCCGUGGgUGCUCUGUgGCGc -5'
13296 3' -53.4 NC_003409.1 + 109310 0.68 0.879341
Target:  5'- ---cUGGGCgcgccgucuuggGCCCACGGGAgccggagcaCGCCGCc -3'
miRNA:   3'- aaaaAUCCG------------UGGGUGCUCU---------GUGGCGc -5'
13296 3' -53.4 NC_003409.1 + 132642 0.67 0.924722
Target:  5'- ----gGGGUGCCC-CGAGACGCgGaCa -3'
miRNA:   3'- aaaaaUCCGUGGGuGCUCUGUGgC-Gc -5'
13296 3' -53.4 NC_003409.1 + 32779 0.67 0.930196
Target:  5'- ----gGGGuCACCCACGAcguucGCAUCGCc -3'
miRNA:   3'- aaaaaUCC-GUGGGUGCUc----UGUGGCGc -5'
13296 3' -53.4 NC_003409.1 + 119800 0.79 0.328795
Target:  5'- ----cAGGCGCCgGCGuGGGCGCCGCGc -3'
miRNA:   3'- aaaaaUCCGUGGgUGC-UCUGUGGCGC- -5'
13296 3' -53.4 NC_003409.1 + 118352 0.67 0.935414
Target:  5'- -----cGGguUCCugGGGuGCGCCGCGc -3'
miRNA:   3'- aaaaauCCguGGGugCUC-UGUGGCGC- -5'
13296 3' -53.4 NC_003409.1 + 118329 0.67 0.935414
Target:  5'- -----cGGguUCCugGGGuGCGCCGCGc -3'
miRNA:   3'- aaaaauCCguGGGugCUC-UGUGGCGC- -5'
13296 3' -53.4 NC_003409.1 + 108203 0.72 0.695648
Target:  5'- ----cAGGCACCCAgugcgaucuCGGGGCGcCCGCu -3'
miRNA:   3'- aaaaaUCCGUGGGU---------GCUCUGU-GGCGc -5'
13296 3' -53.4 NC_003409.1 + 118375 0.67 0.935414
Target:  5'- -----cGGguUCCugGGGuGCGCCGCGc -3'
miRNA:   3'- aaaaauCCguGGGugCUC-UGUGGCGC- -5'
13296 3' -53.4 NC_003409.1 + 38280 0.69 0.848158
Target:  5'- -----uGGCGCCCGUGAuGGCGCCGUc -3'
miRNA:   3'- aaaaauCCGUGGGUGCU-CUGUGGCGc -5'
13296 3' -53.4 NC_003409.1 + 109826 0.67 0.930196
Target:  5'- -gUUUGGuccgcCGCCCA--AGACGCCGCGg -3'
miRNA:   3'- aaAAAUCc----GUGGGUgcUCUGUGGCGC- -5'
13296 3' -53.4 NC_003409.1 + 118398 0.67 0.935414
Target:  5'- -----cGGguUCCugGGGuGCGCCGCGc -3'
miRNA:   3'- aaaaauCCguGGGugCUC-UGUGGCGC- -5'
13296 3' -53.4 NC_003409.1 + 104698 0.67 0.935414
Target:  5'- ------cGCGCCCGCGcAGACcUCGCGu -3'
miRNA:   3'- aaaaaucCGUGGGUGC-UCUGuGGCGC- -5'
13296 3' -53.4 NC_003409.1 + 112022 0.69 0.864197
Target:  5'- ----aAGGCAcggugaacgucCCCGCGucguaagccGACGCCGCGg -3'
miRNA:   3'- aaaaaUCCGU-----------GGGUGCu--------CUGUGGCGC- -5'
13296 3' -53.4 NC_003409.1 + 22587 0.67 0.913009
Target:  5'- ----cAGGCGaCCAgGGGuCGCCGCGc -3'
miRNA:   3'- aaaaaUCCGUgGGUgCUCuGUGGCGC- -5'
13296 3' -53.4 NC_003409.1 + 115804 0.73 0.664191
Target:  5'- ----gAGGCACCCA--AGGCGCUGCa -3'
miRNA:   3'- aaaaaUCCGUGGGUgcUCUGUGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.