Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13296 | 3' | -53.4 | NC_003409.1 | + | 22405 | 0.66 | 0.957727 |
Target: 5'- ----cGGGuCGCCUGCGAagcGGCGCaCGCGu -3' miRNA: 3'- aaaaaUCC-GUGGGUGCU---CUGUG-GCGC- -5' |
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13296 | 3' | -53.4 | NC_003409.1 | + | 112604 | 0.67 | 0.904851 |
Target: 5'- --cUUGGGaCGCCCgacuGCGAGgcugcccuauuaaaGCACCGUGa -3' miRNA: 3'- aaaAAUCC-GUGGG----UGCUC--------------UGUGGCGC- -5' |
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13296 | 3' | -53.4 | NC_003409.1 | + | 108369 | 0.68 | 0.893545 |
Target: 5'- ----cGGGCGCCC-CGAGaucGCACUGgGu -3' miRNA: 3'- aaaaaUCCGUGGGuGCUC---UGUGGCgC- -5' |
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13296 | 3' | -53.4 | NC_003409.1 | + | 32111 | 0.68 | 0.886564 |
Target: 5'- ----gGGGCGCCgACGcggcacAGugGCCGUGu -3' miRNA: 3'- aaaaaUCCGUGGgUGC------UCugUGGCGC- -5' |
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13296 | 3' | -53.4 | NC_003409.1 | + | 87449 | 0.68 | 0.879341 |
Target: 5'- -----uGGCACCCACcAGuuggucACGCCGUGg -3' miRNA: 3'- aaaaauCCGUGGGUGcUC------UGUGGCGC- -5' |
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13296 | 3' | -53.4 | NC_003409.1 | + | 119957 | 0.69 | 0.848158 |
Target: 5'- -----cGGCGCCCACGccGGCGCCuggcacGCGg -3' miRNA: 3'- aaaaauCCGUGGGUGCu-CUGUGG------CGC- -5' |
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13296 | 3' | -53.4 | NC_003409.1 | + | 3418 | 0.71 | 0.726594 |
Target: 5'- ----gAGGUACCCGCaGGGACcaguggggGCCGCa -3' miRNA: 3'- aaaaaUCCGUGGGUG-CUCUG--------UGGCGc -5' |
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13296 | 3' | -53.4 | NC_003409.1 | + | 133195 | 0.74 | 0.56928 |
Target: 5'- ----gAGGCACCUgcagGCGcuGGCGCCGCGg -3' miRNA: 3'- aaaaaUCCGUGGG----UGCu-CUGUGGCGC- -5' |
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13296 | 3' | -53.4 | NC_003409.1 | + | 41821 | 1.06 | 0.006312 |
Target: 5'- cUUUUUAGGCACCCACGAGACACCGCGu -3' miRNA: 3'- -AAAAAUCCGUGGGUGCUCUGUGGCGC- -5' |
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13296 | 3' | -53.4 | NC_003409.1 | + | 70040 | 0.67 | 0.913009 |
Target: 5'- ----gGGGCuCCCugGGGAgCACCGa- -3' miRNA: 3'- aaaaaUCCGuGGGugCUCU-GUGGCgc -5' |
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13296 | 3' | -53.4 | NC_003409.1 | + | 38284 | 0.67 | 0.913009 |
Target: 5'- ---gUGGGCAUgcacagaCGCGAGAUGCgGCGg -3' miRNA: 3'- aaaaAUCCGUGg------GUGCUCUGUGgCGC- -5' |
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13296 | 3' | -53.4 | NC_003409.1 | + | 117726 | 0.66 | 0.957341 |
Target: 5'- ----aGGGUGCCCugGuuGACacaauguGCCGCGc -3' miRNA: 3'- aaaaaUCCGUGGGugCu-CUG-------UGGCGC- -5' |
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13296 | 3' | -53.4 | NC_003409.1 | + | 87627 | 0.66 | 0.949547 |
Target: 5'- ----aAGGCGCUUGCGGGGCAUCa-- -3' miRNA: 3'- aaaaaUCCGUGGGUGCUCUGUGGcgc -5' |
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13296 | 3' | -53.4 | NC_003409.1 | + | 86285 | 0.66 | 0.948235 |
Target: 5'- -----uGGCAaccacagccgcaauCCCAC-AGACACCGCu -3' miRNA: 3'- aaaaauCCGU--------------GGGUGcUCUGUGGCGc -5' |
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13296 | 3' | -53.4 | NC_003409.1 | + | 113502 | 0.66 | 0.947793 |
Target: 5'- -----uGGCGCCCACGuauggguugugguGACGCUGUc -3' miRNA: 3'- aaaaauCCGUGGGUGCu------------CUGUGGCGc -5' |
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13296 | 3' | -53.4 | NC_003409.1 | + | 5755 | 0.66 | 0.945088 |
Target: 5'- --gUUAGGUguuCCCcCGAGACACCu-- -3' miRNA: 3'- aaaAAUCCGu--GGGuGCUCUGUGGcgc -5' |
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13296 | 3' | -53.4 | NC_003409.1 | + | 8918 | 0.66 | 0.940377 |
Target: 5'- ----aAGGUgucACCCcuCGAGuGCGCCGCGc -3' miRNA: 3'- aaaaaUCCG---UGGGu-GCUC-UGUGGCGC- -5' |
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13296 | 3' | -53.4 | NC_003409.1 | + | 53136 | 0.67 | 0.930196 |
Target: 5'- ------cGCGCCC-CGGGACggGCCGCa -3' miRNA: 3'- aaaaaucCGUGGGuGCUCUG--UGGCGc -5' |
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13296 | 3' | -53.4 | NC_003409.1 | + | 131673 | 0.67 | 0.918993 |
Target: 5'- -----uGGCacACCCACuGGGCACCGUu -3' miRNA: 3'- aaaaauCCG--UGGGUGcUCUGUGGCGc -5' |
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13296 | 3' | -53.4 | NC_003409.1 | + | 44356 | 0.66 | 0.945088 |
Target: 5'- uUUUUUGuGCACCCcuguccuggaGCGAGAggaucgUACCGCGc -3' miRNA: 3'- -AAAAAUcCGUGGG----------UGCUCU------GUGGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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