miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13297 5' -58.7 NC_003409.1 + 8917 0.69 0.624936
Target:  5'- aGGUGUcaccCCUCGaguGCGCCGCG-CCuGCg -3'
miRNA:   3'- gCCAUA----GGAGCg--UGUGGCGCcGGuCG- -5'
13297 5' -58.7 NC_003409.1 + 9728 0.66 0.771935
Target:  5'- aCGGc-UCCUCuaACGCCaGUGGCCAa- -3'
miRNA:   3'- -GCCauAGGAGcgUGUGG-CGCCGGUcg -5'
13297 5' -58.7 NC_003409.1 + 13881 0.69 0.614879
Target:  5'- gCGGgagCCgagCGUcaAgGCCGCGGCCAaGCu -3'
miRNA:   3'- -GCCauaGGa--GCG--UgUGGCGCCGGU-CG- -5'
13297 5' -58.7 NC_003409.1 + 24201 0.74 0.366138
Target:  5'- -----cCCUCGCGCACUGCGcGCgCGGCg -3'
miRNA:   3'- gccauaGGAGCGUGUGGCGC-CG-GUCG- -5'
13297 5' -58.7 NC_003409.1 + 31343 0.68 0.695051
Target:  5'- aGGUGUCCuUCGUcguccucuGCGCCGC-GCUuGCg -3'
miRNA:   3'- gCCAUAGG-AGCG--------UGUGGCGcCGGuCG- -5'
13297 5' -58.7 NC_003409.1 + 36318 0.7 0.55504
Target:  5'- gGGgcaagAUCC-CGCACACgGCGuugaCCAGCg -3'
miRNA:   3'- gCCa----UAGGaGCGUGUGgCGCc---GGUCG- -5'
13297 5' -58.7 NC_003409.1 + 40521 0.71 0.52476
Target:  5'- gCGGUGUCugCUCGUugGaCGCGGCCguucgguGGCg -3'
miRNA:   3'- -GCCAUAG--GAGCGugUgGCGCCGG-------UCG- -5'
13297 5' -58.7 NC_003409.1 + 43106 0.66 0.771935
Target:  5'- uCGGUAUUgaCGCAaGCgGCGGCgAGg -3'
miRNA:   3'- -GCCAUAGgaGCGUgUGgCGCCGgUCg -5'
13297 5' -58.7 NC_003409.1 + 43468 0.66 0.781094
Target:  5'- ----cUCCgacaUGCugGCCGCGGUguGCg -3'
miRNA:   3'- gccauAGGa---GCGugUGGCGCCGguCG- -5'
13297 5' -58.7 NC_003409.1 + 43510 0.71 0.516084
Target:  5'- gGGUGUCagcaCGUACACCaCGGCCucugGGCa -3'
miRNA:   3'- gCCAUAGga--GCGUGUGGcGCCGG----UCG- -5'
13297 5' -58.7 NC_003409.1 + 43640 1.12 0.000916
Target:  5'- aCGGUAUCCUCGCACACCGCGGCCAGCa -3'
miRNA:   3'- -GCCAUAGGAGCGUGUGGCGCCGGUCG- -5'
13297 5' -58.7 NC_003409.1 + 43660 0.66 0.807764
Target:  5'- gGGUGccaaCCUCGU-CACCGCcGUUAGCu -3'
miRNA:   3'- gCCAUa---GGAGCGuGUGGCGcCGGUCG- -5'
13297 5' -58.7 NC_003409.1 + 49150 0.67 0.714751
Target:  5'- aGGUc-CUUCGCACccugggACCGCaGGCCGGg -3'
miRNA:   3'- gCCAuaGGAGCGUG------UGGCG-CCGGUCg -5'
13297 5' -58.7 NC_003409.1 + 57494 0.66 0.762655
Target:  5'- uGGUGUCa--GguUACuggaCGUGGCCAGCg -3'
miRNA:   3'- gCCAUAGgagCguGUG----GCGCCGGUCG- -5'
13297 5' -58.7 NC_003409.1 + 58167 0.66 0.799017
Target:  5'- gGGUG-CCUCGUACAgCCGCuGauacgCGGCg -3'
miRNA:   3'- gCCAUaGGAGCGUGU-GGCGcCg----GUCG- -5'
13297 5' -58.7 NC_003409.1 + 59997 0.67 0.724503
Target:  5'- aGGc--CCUCGUACGUgGCGGCCAuggGCa -3'
miRNA:   3'- gCCauaGGAGCGUGUGgCGCCGGU---CG- -5'
13297 5' -58.7 NC_003409.1 + 63459 0.67 0.757032
Target:  5'- -cGUAUCCUCcagcuugcaGgACAUCGCGGCCuauuuauaucagacuAGCa -3'
miRNA:   3'- gcCAUAGGAG---------CgUGUGGCGCCGG---------------UCG- -5'
13297 5' -58.7 NC_003409.1 + 68041 0.66 0.771935
Target:  5'- -cGUGUCCguugaacUGCGCA-CGCGGCCcGCu -3'
miRNA:   3'- gcCAUAGGa------GCGUGUgGCGCCGGuCG- -5'
13297 5' -58.7 NC_003409.1 + 73636 0.66 0.807764
Target:  5'- gCGGUGgaugUgUUGUACACCauauucugugacGCGGCCuGCc -3'
miRNA:   3'- -GCCAUa---GgAGCGUGUGG------------CGCCGGuCG- -5'
13297 5' -58.7 NC_003409.1 + 78996 0.77 0.249022
Target:  5'- aCGGUAaUCUCGCcgACCGCcaaGGCCAGCa -3'
miRNA:   3'- -GCCAUaGGAGCGugUGGCG---CCGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.