miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13297 5' -58.7 NC_003409.1 + 133203 0.7 0.56492
Target:  5'- cCGGUGgugaggcaCCUgcaggCGCugGCGCCGCGGaCCGGCc -3'
miRNA:   3'- -GCCAUa-------GGA-----GCG--UGUGGCGCC-GGUCG- -5'
13297 5' -58.7 NC_003409.1 + 133050 0.7 0.584812
Target:  5'- aGGUG-CCUCaC-CACCGgGGCCGGg -3'
miRNA:   3'- gCCAUaGGAGcGuGUGGCgCCGGUCg -5'
13297 5' -58.7 NC_003409.1 + 132974 0.71 0.525727
Target:  5'- aGGUA-CUgcaGCGCGCCGCGcGCCuguGCg -3'
miRNA:   3'- gCCAUaGGag-CGUGUGGCGC-CGGu--CG- -5'
13297 5' -58.7 NC_003409.1 + 132415 0.66 0.771935
Target:  5'- uCGGgcacUCUgggCGC-CACCcucuCGGCCAGCa -3'
miRNA:   3'- -GCCau--AGGa--GCGuGUGGc---GCCGGUCG- -5'
13297 5' -58.7 NC_003409.1 + 131139 0.67 0.708867
Target:  5'- aGGacUGUCCUCGUuuaagcucuuccacaGuCACCGUGGCCAc- -3'
miRNA:   3'- gCC--AUAGGAGCG---------------U-GUGGCGCCGGUcg -5'
13297 5' -58.7 NC_003409.1 + 117622 0.76 0.254962
Target:  5'- uGGUggCCUgGUugACACCGCGuGCCGGCc -3'
miRNA:   3'- gCCAuaGGAgCG--UGUGGCGC-CGGUCG- -5'
13297 5' -58.7 NC_003409.1 + 113405 0.7 0.574846
Target:  5'- aCGGUGUCUgagccagcgCGCaACACgGCGaucgccugcGCCAGCg -3'
miRNA:   3'- -GCCAUAGGa--------GCG-UGUGgCGC---------CGGUCG- -5'
13297 5' -58.7 NC_003409.1 + 113254 0.75 0.293063
Target:  5'- aGGUGcCCUCGCACACCcgucGCGGUguGg -3'
miRNA:   3'- gCCAUaGGAGCGUGUGG----CGCCGguCg -5'
13297 5' -58.7 NC_003409.1 + 112027 0.67 0.753263
Target:  5'- aCGGUgaacGUCCcCGCgucguaagccgACGCCGCggaaacucGGUCAGCg -3'
miRNA:   3'- -GCCA----UAGGaGCG-----------UGUGGCG--------CCGGUCG- -5'
13297 5' -58.7 NC_003409.1 + 111840 0.73 0.382182
Target:  5'- gGGUuUCCUCGCGucggcCACCGCGGgggCGGCc -3'
miRNA:   3'- gCCAuAGGAGCGU-----GUGGCGCCg--GUCG- -5'
13297 5' -58.7 NC_003409.1 + 108301 0.67 0.734178
Target:  5'- gGGUuUCCUCGCGCGauGCuuuucucugGGCCucuGCg -3'
miRNA:   3'- gCCAuAGGAGCGUGUggCG---------CCGGu--CG- -5'
13297 5' -58.7 NC_003409.1 + 107903 0.66 0.806896
Target:  5'- -aGUG-CCU-GCACGCUGaucuuguCGGCCAGCg -3'
miRNA:   3'- gcCAUaGGAgCGUGUGGC-------GCCGGUCG- -5'
13297 5' -58.7 NC_003409.1 + 102222 0.67 0.753263
Target:  5'- gCGGUAUCUagGUACugACCuaGGUCAGUc -3'
miRNA:   3'- -GCCAUAGGagCGUG--UGGcgCCGGUCG- -5'
13297 5' -58.7 NC_003409.1 + 78996 0.77 0.249022
Target:  5'- aCGGUAaUCUCGCcgACCGCcaaGGCCAGCa -3'
miRNA:   3'- -GCCAUaGGAGCGugUGGCG---CCGGUCG- -5'
13297 5' -58.7 NC_003409.1 + 73636 0.66 0.807764
Target:  5'- gCGGUGgaugUgUUGUACACCauauucugugacGCGGCCuGCc -3'
miRNA:   3'- -GCCAUa---GgAGCGUGUGG------------CGCCGGuCG- -5'
13297 5' -58.7 NC_003409.1 + 68041 0.66 0.771935
Target:  5'- -cGUGUCCguugaacUGCGCA-CGCGGCCcGCu -3'
miRNA:   3'- gcCAUAGGa------GCGUGUgGCGCCGGuCG- -5'
13297 5' -58.7 NC_003409.1 + 63459 0.67 0.757032
Target:  5'- -cGUAUCCUCcagcuugcaGgACAUCGCGGCCuauuuauaucagacuAGCa -3'
miRNA:   3'- gcCAUAGGAG---------CgUGUGGCGCCGG---------------UCG- -5'
13297 5' -58.7 NC_003409.1 + 59997 0.67 0.724503
Target:  5'- aGGc--CCUCGUACGUgGCGGCCAuggGCa -3'
miRNA:   3'- gCCauaGGAGCGUGUGgCGCCGGU---CG- -5'
13297 5' -58.7 NC_003409.1 + 58167 0.66 0.799017
Target:  5'- gGGUG-CCUCGUACAgCCGCuGauacgCGGCg -3'
miRNA:   3'- gCCAUaGGAGCGUGU-GGCGcCg----GUCG- -5'
13297 5' -58.7 NC_003409.1 + 57494 0.66 0.762655
Target:  5'- uGGUGUCa--GguUACuggaCGUGGCCAGCg -3'
miRNA:   3'- gCCAUAGgagCguGUG----GCGCCGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.