Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13297 | 5' | -58.7 | NC_003409.1 | + | 73636 | 0.66 | 0.807764 |
Target: 5'- gCGGUGgaugUgUUGUACACCauauucugugacGCGGCCuGCc -3' miRNA: 3'- -GCCAUa---GgAGCGUGUGG------------CGCCGGuCG- -5' |
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13297 | 5' | -58.7 | NC_003409.1 | + | 43640 | 1.12 | 0.000916 |
Target: 5'- aCGGUAUCCUCGCACACCGCGGCCAGCa -3' miRNA: 3'- -GCCAUAGGAGCGUGUGGCGCCGGUCG- -5' |
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13297 | 5' | -58.7 | NC_003409.1 | + | 113254 | 0.75 | 0.293063 |
Target: 5'- aGGUGcCCUCGCACACCcgucGCGGUguGg -3' miRNA: 3'- gCCAUaGGAGCGUGUGG----CGCCGguCg -5' |
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13297 | 5' | -58.7 | NC_003409.1 | + | 132974 | 0.71 | 0.525727 |
Target: 5'- aGGUA-CUgcaGCGCGCCGCGcGCCuguGCg -3' miRNA: 3'- gCCAUaGGag-CGUGUGGCGC-CGGu--CG- -5' |
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13297 | 5' | -58.7 | NC_003409.1 | + | 36318 | 0.7 | 0.55504 |
Target: 5'- gGGgcaagAUCC-CGCACACgGCGuugaCCAGCg -3' miRNA: 3'- gCCa----UAGGaGCGUGUGgCGCc---GGUCG- -5' |
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13297 | 5' | -58.7 | NC_003409.1 | + | 133203 | 0.7 | 0.56492 |
Target: 5'- cCGGUGgugaggcaCCUgcaggCGCugGCGCCGCGGaCCGGCc -3' miRNA: 3'- -GCCAUa-------GGA-----GCG--UGUGGCGCC-GGUCG- -5' |
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13297 | 5' | -58.7 | NC_003409.1 | + | 8917 | 0.69 | 0.624936 |
Target: 5'- aGGUGUcaccCCUCGaguGCGCCGCG-CCuGCg -3' miRNA: 3'- gCCAUA----GGAGCg--UGUGGCGCcGGuCG- -5' |
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13297 | 5' | -58.7 | NC_003409.1 | + | 108301 | 0.67 | 0.734178 |
Target: 5'- gGGUuUCCUCGCGCGauGCuuuucucugGGCCucuGCg -3' miRNA: 3'- gCCAuAGGAGCGUGUggCG---------CCGGu--CG- -5' |
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13297 | 5' | -58.7 | NC_003409.1 | + | 102222 | 0.67 | 0.753263 |
Target: 5'- gCGGUAUCUagGUACugACCuaGGUCAGUc -3' miRNA: 3'- -GCCAUAGGagCGUG--UGGcgCCGGUCG- -5' |
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13297 | 5' | -58.7 | NC_003409.1 | + | 63459 | 0.67 | 0.757032 |
Target: 5'- -cGUAUCCUCcagcuugcaGgACAUCGCGGCCuauuuauaucagacuAGCa -3' miRNA: 3'- gcCAUAGGAG---------CgUGUGGCGCCGG---------------UCG- -5' |
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13297 | 5' | -58.7 | NC_003409.1 | + | 43106 | 0.66 | 0.771935 |
Target: 5'- uCGGUAUUgaCGCAaGCgGCGGCgAGg -3' miRNA: 3'- -GCCAUAGgaGCGUgUGgCGCCGgUCg -5' |
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13297 | 5' | -58.7 | NC_003409.1 | + | 58167 | 0.66 | 0.799017 |
Target: 5'- gGGUG-CCUCGUACAgCCGCuGauacgCGGCg -3' miRNA: 3'- gCCAUaGGAGCGUGU-GGCGcCg----GUCG- -5' |
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13297 | 5' | -58.7 | NC_003409.1 | + | 107903 | 0.66 | 0.806896 |
Target: 5'- -aGUG-CCU-GCACGCUGaucuuguCGGCCAGCg -3' miRNA: 3'- gcCAUaGGAgCGUGUGGC-------GCCGGUCG- -5' |
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13297 | 5' | -58.7 | NC_003409.1 | + | 113405 | 0.7 | 0.574846 |
Target: 5'- aCGGUGUCUgagccagcgCGCaACACgGCGaucgccugcGCCAGCg -3' miRNA: 3'- -GCCAUAGGa--------GCG-UGUGgCGC---------CGGUCG- -5' |
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13297 | 5' | -58.7 | NC_003409.1 | + | 40521 | 0.71 | 0.52476 |
Target: 5'- gCGGUGUCugCUCGUugGaCGCGGCCguucgguGGCg -3' miRNA: 3'- -GCCAUAG--GAGCGugUgGCGCCGG-------UCG- -5' |
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13297 | 5' | -58.7 | NC_003409.1 | + | 43510 | 0.71 | 0.516084 |
Target: 5'- gGGUGUCagcaCGUACACCaCGGCCucugGGCa -3' miRNA: 3'- gCCAUAGga--GCGUGUGGcGCCGG----UCG- -5' |
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13297 | 5' | -58.7 | NC_003409.1 | + | 111840 | 0.73 | 0.382182 |
Target: 5'- gGGUuUCCUCGCGucggcCACCGCGGgggCGGCc -3' miRNA: 3'- gCCAuAGGAGCGU-----GUGGCGCCg--GUCG- -5' |
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13297 | 5' | -58.7 | NC_003409.1 | + | 24201 | 0.74 | 0.366138 |
Target: 5'- -----cCCUCGCGCACUGCGcGCgCGGCg -3' miRNA: 3'- gccauaGGAGCGUGUGGCGC-CG-GUCG- -5' |
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13297 | 5' | -58.7 | NC_003409.1 | + | 117622 | 0.76 | 0.254962 |
Target: 5'- uGGUggCCUgGUugACACCGCGuGCCGGCc -3' miRNA: 3'- gCCAuaGGAgCG--UGUGGCGC-CGGUCG- -5' |
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13297 | 5' | -58.7 | NC_003409.1 | + | 43660 | 0.66 | 0.807764 |
Target: 5'- gGGUGccaaCCUCGU-CACCGCcGUUAGCu -3' miRNA: 3'- gCCAUa---GGAGCGuGUGGCGcCGGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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