miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13297 5' -58.7 NC_003409.1 + 107903 0.66 0.806896
Target:  5'- -aGUG-CCU-GCACGCUGaucuuguCGGCCAGCg -3'
miRNA:   3'- gcCAUaGGAgCGUGUGGC-------GCCGGUCG- -5'
13297 5' -58.7 NC_003409.1 + 58167 0.66 0.799017
Target:  5'- gGGUG-CCUCGUACAgCCGCuGauacgCGGCg -3'
miRNA:   3'- gCCAUaGGAGCGUGU-GGCGcCg----GUCG- -5'
13297 5' -58.7 NC_003409.1 + 43106 0.66 0.771935
Target:  5'- uCGGUAUUgaCGCAaGCgGCGGCgAGg -3'
miRNA:   3'- -GCCAUAGgaGCGUgUGgCGCCGgUCg -5'
13297 5' -58.7 NC_003409.1 + 63459 0.67 0.757032
Target:  5'- -cGUAUCCUCcagcuugcaGgACAUCGCGGCCuauuuauaucagacuAGCa -3'
miRNA:   3'- gcCAUAGGAG---------CgUGUGGCGCCGG---------------UCG- -5'
13297 5' -58.7 NC_003409.1 + 102222 0.67 0.753263
Target:  5'- gCGGUAUCUagGUACugACCuaGGUCAGUc -3'
miRNA:   3'- -GCCAUAGGagCGUG--UGGcgCCGGUCG- -5'
13297 5' -58.7 NC_003409.1 + 108301 0.67 0.734178
Target:  5'- gGGUuUCCUCGCGCGauGCuuuucucugGGCCucuGCg -3'
miRNA:   3'- gCCAuAGGAGCGUGUggCG---------CCGGu--CG- -5'
13297 5' -58.7 NC_003409.1 + 8917 0.69 0.624936
Target:  5'- aGGUGUcaccCCUCGaguGCGCCGCG-CCuGCg -3'
miRNA:   3'- gCCAUA----GGAGCg--UGUGGCGCcGGuCG- -5'
13297 5' -58.7 NC_003409.1 + 133203 0.7 0.56492
Target:  5'- cCGGUGgugaggcaCCUgcaggCGCugGCGCCGCGGaCCGGCc -3'
miRNA:   3'- -GCCAUa-------GGA-----GCG--UGUGGCGCC-GGUCG- -5'
13297 5' -58.7 NC_003409.1 + 36318 0.7 0.55504
Target:  5'- gGGgcaagAUCC-CGCACACgGCGuugaCCAGCg -3'
miRNA:   3'- gCCa----UAGGaGCGUGUGgCGCc---GGUCG- -5'
13297 5' -58.7 NC_003409.1 + 132974 0.71 0.525727
Target:  5'- aGGUA-CUgcaGCGCGCCGCGcGCCuguGCg -3'
miRNA:   3'- gCCAUaGGag-CGUGUGGCGC-CGGu--CG- -5'
13297 5' -58.7 NC_003409.1 + 113254 0.75 0.293063
Target:  5'- aGGUGcCCUCGCACACCcgucGCGGUguGg -3'
miRNA:   3'- gCCAUaGGAGCGUGUGG----CGCCGguCg -5'
13297 5' -58.7 NC_003409.1 + 43640 1.12 0.000916
Target:  5'- aCGGUAUCCUCGCACACCGCGGCCAGCa -3'
miRNA:   3'- -GCCAUAGGAGCGUGUGGCGCCGGUCG- -5'
13297 5' -58.7 NC_003409.1 + 73636 0.66 0.807764
Target:  5'- gCGGUGgaugUgUUGUACACCauauucugugacGCGGCCuGCc -3'
miRNA:   3'- -GCCAUa---GgAGCGUGUGG------------CGCCGGuCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.