Results 21 - 33 of 33 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13297 | 5' | -58.7 | NC_003409.1 | + | 112027 | 0.67 | 0.753263 |
Target: 5'- aCGGUgaacGUCCcCGCgucguaagccgACGCCGCggaaacucGGUCAGCg -3' miRNA: 3'- -GCCA----UAGGaGCG-----------UGUGGCG--------CCGGUCG- -5' |
|||||||
13297 | 5' | -58.7 | NC_003409.1 | + | 102222 | 0.67 | 0.753263 |
Target: 5'- gCGGUAUCUagGUACugACCuaGGUCAGUc -3' miRNA: 3'- -GCCAUAGGagCGUG--UGGcgCCGGUCG- -5' |
|||||||
13297 | 5' | -58.7 | NC_003409.1 | + | 63459 | 0.67 | 0.757032 |
Target: 5'- -cGUAUCCUCcagcuugcaGgACAUCGCGGCCuauuuauaucagacuAGCa -3' miRNA: 3'- gcCAUAGGAG---------CgUGUGGCGCCGG---------------UCG- -5' |
|||||||
13297 | 5' | -58.7 | NC_003409.1 | + | 57494 | 0.66 | 0.762655 |
Target: 5'- uGGUGUCa--GguUACuggaCGUGGCCAGCg -3' miRNA: 3'- gCCAUAGgagCguGUG----GCGCCGGUCG- -5' |
|||||||
13297 | 5' | -58.7 | NC_003409.1 | + | 43106 | 0.66 | 0.771935 |
Target: 5'- uCGGUAUUgaCGCAaGCgGCGGCgAGg -3' miRNA: 3'- -GCCAUAGgaGCGUgUGgCGCCGgUCg -5' |
|||||||
13297 | 5' | -58.7 | NC_003409.1 | + | 9728 | 0.66 | 0.771935 |
Target: 5'- aCGGc-UCCUCuaACGCCaGUGGCCAa- -3' miRNA: 3'- -GCCauAGGAGcgUGUGG-CGCCGGUcg -5' |
|||||||
13297 | 5' | -58.7 | NC_003409.1 | + | 68041 | 0.66 | 0.771935 |
Target: 5'- -cGUGUCCguugaacUGCGCA-CGCGGCCcGCu -3' miRNA: 3'- gcCAUAGGa------GCGUGUgGCGCCGGuCG- -5' |
|||||||
13297 | 5' | -58.7 | NC_003409.1 | + | 132415 | 0.66 | 0.771935 |
Target: 5'- uCGGgcacUCUgggCGC-CACCcucuCGGCCAGCa -3' miRNA: 3'- -GCCau--AGGa--GCGuGUGGc---GCCGGUCG- -5' |
|||||||
13297 | 5' | -58.7 | NC_003409.1 | + | 43468 | 0.66 | 0.781094 |
Target: 5'- ----cUCCgacaUGCugGCCGCGGUguGCg -3' miRNA: 3'- gccauAGGa---GCGugUGGCGCCGguCG- -5' |
|||||||
13297 | 5' | -58.7 | NC_003409.1 | + | 58167 | 0.66 | 0.799017 |
Target: 5'- gGGUG-CCUCGUACAgCCGCuGauacgCGGCg -3' miRNA: 3'- gCCAUaGGAGCGUGU-GGCGcCg----GUCG- -5' |
|||||||
13297 | 5' | -58.7 | NC_003409.1 | + | 107903 | 0.66 | 0.806896 |
Target: 5'- -aGUG-CCU-GCACGCUGaucuuguCGGCCAGCg -3' miRNA: 3'- gcCAUaGGAgCGUGUGGC-------GCCGGUCG- -5' |
|||||||
13297 | 5' | -58.7 | NC_003409.1 | + | 73636 | 0.66 | 0.807764 |
Target: 5'- gCGGUGgaugUgUUGUACACCauauucugugacGCGGCCuGCc -3' miRNA: 3'- -GCCAUa---GgAGCGUGUGG------------CGCCGGuCG- -5' |
|||||||
13297 | 5' | -58.7 | NC_003409.1 | + | 43660 | 0.66 | 0.807764 |
Target: 5'- gGGUGccaaCCUCGU-CACCGCcGUUAGCu -3' miRNA: 3'- gCCAUa---GGAGCGuGUGGCGcCGGUCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home